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811,103
The SWISSMODEL Workspace: A webbased environment for protein structure homology modelling
 BIOINFORMATICS
, 2005
"... Motivation: Homology models of proteins are of great interest for planning and analyzing biological experiments when no experimental threedimensional structures are available. Building homology models requires specialized programs and uptodate sequence and structural databases. Integrating all re ..."
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Cited by 555 (5 self)
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required tools, programs and databases into a single webbased workspace facilitates access to homology modelling from a computer with web connection without the need of downloading and installing large program packages and databases. Results: SWISSMODEL Workspace is a webbased integrated service
Efficient Variants of the ICP Algorithm
 INTERNATIONAL CONFERENCE ON 3D DIGITAL IMAGING AND MODELING
, 2001
"... The ICP (Iterative Closest Point) algorithm is widely used for geometric alignment of threedimensional models when an initial estimate of the relative pose is known. Many variants of ICP have been proposed, affecting all phases of the algorithm from the selection and matching of points to the minim ..."
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Cited by 702 (5 self)
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The ICP (Iterative Closest Point) algorithm is widely used for geometric alignment of threedimensional models when an initial estimate of the relative pose is known. Many variants of ICP have been proposed, affecting all phases of the algorithm from the selection and matching of points
Improved Approximation Algorithms for Maximum Cut and Satisfiability Problems Using Semidefinite Programming
 Journal of the ACM
, 1995
"... We present randomized approximation algorithms for the maximum cut (MAX CUT) and maximum 2satisfiability (MAX 2SAT) problems that always deliver solutions of expected value at least .87856 times the optimal value. These algorithms use a simple and elegant technique that randomly rounds the solution ..."
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Cited by 1231 (13 self)
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We present randomized approximation algorithms for the maximum cut (MAX CUT) and maximum 2satisfiability (MAX 2SAT) problems that always deliver solutions of expected value at least .87856 times the optimal value. These algorithms use a simple and elegant technique that randomly rounds
Discriminative Training Methods for Hidden Markov Models: Theory and Experiments with Perceptron Algorithms
, 2002
"... We describe new algorithms for training tagging models, as an alternative to maximumentropy models or conditional random fields (CRFs). The algorithms rely on Viterbi decoding of training examples, combined with simple additive updates. We describe theory justifying the algorithms through a modific ..."
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Cited by 641 (16 self)
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modification of the proof of convergence of the perceptron algorithm for classification problems. We give experimental results on partofspeech tagging and base noun phrase chunking, in both cases showing improvements over results for a maximumentropy tagger.
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
, 2003
"... The increase in the number of large data sets and the complexity of current probabilistic sequence evolution models necessitates fast and reliable phylogeny reconstruction methods. We describe a new approach, based on the maximumlikelihood principle, which clearly satisfies these requirements. The ..."
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Cited by 2109 (30 self)
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. The core of this method is a simple hillclimbing algorithm that adjusts tree topology and branch lengths simultaneously. This algorithm starts from an initial tree built by a fast distancebased method and modifies this tree to improve its likelihood at each iteration. Due to this simultaneous adjustment
Constrained model predictive control: Stability and optimality
 AUTOMATICA
, 2000
"... Model predictive control is a form of control in which the current control action is obtained by solving, at each sampling instant, a finite horizon openloop optimal control problem, using the current state of the plant as the initial state; the optimization yields an optimal control sequence and t ..."
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Cited by 696 (15 self)
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Model predictive control is a form of control in which the current control action is obtained by solving, at each sampling instant, a finite horizon openloop optimal control problem, using the current state of the plant as the initial state; the optimization yields an optimal control sequence
Algorithms for Scalable Synchronization on SharedMemory Multiprocessors
 ACM Transactions on Computer Systems
, 1991
"... Busywait techniques are heavily used for mutual exclusion and barrier synchronization in sharedmemory parallel programs. Unfortunately, typical implementations of busywaiting tend to produce large amounts of memory and interconnect contention, introducing performance bottlenecks that become marke ..."
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Cited by 567 (32 self)
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markedly more pronounced as applications scale. We argue that this problem is not fundamental, and that one can in fact construct busywait synchronization algorithms that induce no memory or interconnect contention. The key to these algorithms is for every processor to spin on separate locally
Rank Aggregation Methods for the Web
, 2010
"... We consider the problem of combining ranking results from various sources. In the context of the Web, the main applications include building metasearch engines, combining ranking functions, selecting documents based on multiple criteria, and improving search precision through word associations. Wed ..."
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Cited by 473 (6 self)
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We consider the problem of combining ranking results from various sources. In the context of the Web, the main applications include building metasearch engines, combining ranking functions, selecting documents based on multiple criteria, and improving search precision through word associations
On Spectral Clustering: Analysis and an algorithm
 ADVANCES IN NEURAL INFORMATION PROCESSING SYSTEMS
, 2001
"... Despite many empirical successes of spectral clustering methods  algorithms that cluster points using eigenvectors of matrices derived from the distances between the points  there are several unresolved issues. First, there is a wide variety of algorithms that use the eigenvectors in slightly ..."
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Cited by 1697 (13 self)
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Despite many empirical successes of spectral clustering methods  algorithms that cluster points using eigenvectors of matrices derived from the distances between the points  there are several unresolved issues. First, there is a wide variety of algorithms that use the eigenvectors
An Efficient Boosting Algorithm for Combining Preferences
, 1999
"... The problem of combining preferences arises in several applications, such as combining the results of different search engines. This work describes an efficient algorithm for combining multiple preferences. We first give a formal framework for the problem. We then describe and analyze a new boosting ..."
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Cited by 707 (18 self)
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The problem of combining preferences arises in several applications, such as combining the results of different search engines. This work describes an efficient algorithm for combining multiple preferences. We first give a formal framework for the problem. We then describe and analyze a new
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