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A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
, 2003
"... The increase in the number of large data sets and the complexity of current probabilistic sequence evolution models necessitates fast and reliable phylogeny reconstruction methods. We describe a new approach, based on the maximumlikelihood principle, which clearly satisfies these requirements. The ..."
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Cited by 2109 (30 self)
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. The core of this method is a simple hillclimbing algorithm that adjusts tree topology and branch lengths simultaneously. This algorithm starts from an initial tree built by a fast distancebased method and modifies this tree to improve its likelihood at each iteration. Due to this simultaneous adjustment
Randomized Algorithms
, 1995
"... Randomized algorithms, once viewed as a tool in computational number theory, have by now found widespread application. Growth has been fueled by the two major benefits of randomization: simplicity and speed. For many applications a randomized algorithm is the fastest algorithm available, or the simp ..."
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Cited by 2210 (37 self)
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Randomized algorithms, once viewed as a tool in computational number theory, have by now found widespread application. Growth has been fueled by the two major benefits of randomization: simplicity and speed. For many applications a randomized algorithm is the fastest algorithm available
Planning Algorithms
, 2004
"... This book presents a unified treatment of many different kinds of planning algorithms. The subject lies at the crossroads between robotics, control theory, artificial intelligence, algorithms, and computer graphics. The particular subjects covered include motion planning, discrete planning, planning ..."
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Cited by 1108 (51 self)
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This book presents a unified treatment of many different kinds of planning algorithms. The subject lies at the crossroads between robotics, control theory, artificial intelligence, algorithms, and computer graphics. The particular subjects covered include motion planning, discrete planning
The Viterbi algorithm
 Proceedings of the IEEE
, 1973
"... vol. 6, no. 8, pp. 211220, 1951. [7] J. L. Anderson and J. W..Ryon, “Electromagnetic radiation in accelerated systems, ” Phys. Rev., vol. 181, pp. 17651775, 1969. [8] C. V. Heer, “Resonant frequencies of an electromagnetic cavity in an accelerated system of reference, ” Phys. Reu., vol. 134, pp. A ..."
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Cited by 985 (3 self)
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. A799A804, 1964. [9] T. C. Mo, “Theory of electrodynamics in media in noninertial frames and applications, ” J. Math. Phys., vol. 11, pp. 25892610, 1970.
A Limited Memory Algorithm for Bound Constrained Optimization
 SIAM Journal on Scientific Computing
, 1994
"... An algorithm for solving large nonlinear optimization problems with simple bounds is described. ..."
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Cited by 557 (9 self)
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An algorithm for solving large nonlinear optimization problems with simple bounds is described.
The CN2 Induction Algorithm
 MACHINE LEARNING
, 1989
"... Systems for inducing concept descriptions from examples are valuable tools for assisting in the task of knowledge acquisition for expert systems. This paper presents a description and empirical evaluation of a new induction system, cn2, designed for the efficient induction of simple, comprehensib ..."
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Cited by 884 (6 self)
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Systems for inducing concept descriptions from examples are valuable tools for assisting in the task of knowledge acquisition for expert systems. This paper presents a description and empirical evaluation of a new induction system, cn2, designed for the efficient induction of simple
On Spectral Clustering: Analysis and an algorithm
 ADVANCES IN NEURAL INFORMATION PROCESSING SYSTEMS
, 2001
"... Despite many empirical successes of spectral clustering methods  algorithms that cluster points using eigenvectors of matrices derived from the distances between the points  there are several unresolved issues. First, there is a wide variety of algorithms that use the eigenvectors in slightly ..."
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Cited by 1697 (13 self)
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in slightly different ways. Second, many of these algorithms have no proof that they will actually compute a reasonable clustering. In this paper, we present a simple spectral clustering algorithm that can be implemented using a few lines of Matlab. Using tools from matrix perturbation theory, we analyze
A Simple RuleBased Part of Speech Tagger
, 1992
"... Automatic part of speech tagging is an area of natural language processing where statistical techniques have been more successful than rule based methods. In this paper, we present a sim ple rulebased part of speech tagger which automatically acquires its rules and tags with accuracy coinparable ..."
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Cited by 587 (10 self)
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genre or language to another. Perhaps the biggest contribution of this work is in demonstrating that the stochastic method is not the only viable method for part of speech tagging. The fact that a simple rulebased tagger that automatically learns its rules can perform so well should offer encouragement
A learning algorithm for Boltzmann machines
 Cognitive Science
, 1985
"... The computotionol power of massively parallel networks of simple processing elements resides in the communication bandwidth provided by the hardware connections between elements. These connections con allow a significant fraction of the knowledge of the system to be applied to an instance of a probl ..."
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Cited by 586 (13 self)
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to a general learning rule for modifying the connection strengths so as to incorporate knowledge obout o task domain in on efficient way. We describe some simple examples in which the learning algorithm creates internal representations thot ore demonstrobly the most efficient way of using
Optimal Aggregation Algorithms for Middleware
 IN PODS
, 2001
"... Assume that each object in a database has m grades, or scores, one for each of m attributes. For example, an object can have a color grade, that tells how red it is, and a shape grade, that tells how round it is. For each attribute, there is a sorted list, which lists each object and its grade under ..."
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Cited by 701 (4 self)
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simple algorithm (“the threshold algorithm”, or TA) that is optimal in a much stronger sense than FA. We show that TA is essentially optimal, not just for some monotone aggregation functions, but for all of them, and not just in a highprobability worstcase sense, but over every database. Unlike FA
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