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Modeling and simulation of genetic regulatory systems: A literature review

by Hidde De Jong - JOURNAL OF COMPUTATIONAL BIOLOGY , 2002
"... In order to understand the functioning of organisms on the molecular level, we need to know which genes are expressed, when and where in the organism, and to which extent. The regulation of gene expression is achieved through genetic regulatory systems structured by networks of interactions between ..."
Abstract - Cited by 729 (15 self) - Add to MetaCart
In order to understand the functioning of organisms on the molecular level, we need to know which genes are expressed, when and where in the organism, and to which extent. The regulation of gene expression is achieved through genetic regulatory systems structured by networks of interactions between

The Elements of Statistical Learning -- Data Mining, Inference, and Prediction

by Trevor Hastie, Robert Tibshirani, Jerome Friedman
"... ..."
Abstract - Cited by 1320 (13 self) - Add to MetaCart
Abstract not found

Feature-Rich Part-of-Speech Tagging with a Cyclic Dependency Network

by Kristina Toutanova , Dan Klein, Christopher D. Manning, Yoram Singer - IN PROCEEDINGS OF HLT-NAACL , 2003
"... We present a new part-of-speech tagger that demonstrates the following ideas: (i) explicit use of both preceding and following tag contexts via a dependency network representation, (ii) broad use of lexical features, including jointly conditioning on multiple consecutive words, (iii) effective ..."
Abstract - Cited by 660 (23 self) - Add to MetaCart
We present a new part-of-speech tagger that demonstrates the following ideas: (i) explicit use of both preceding and following tag contexts via a dependency network representation, (ii) broad use of lexical features, including jointly conditioning on multiple consecutive words, (iii

The Bioperl Toolkit: Perl Modules for the Life Sciences

by Jason E. Stajich, David Block, Kris Boulez, Steven E. Brenner, Stephen A. Chervitz, Chris Dagdigian, Georg Fuellen, James G.R. Gilbert, Ian Korf, Hilmar Lapp, Heikki Lehväslaiho, Chad Matsalla, Chris J. Mungall, Brian I. Osborne, Matthew R. Pocock, Peter Schattner, Martin Senger, Lincoln D. Stein, Elia Stupka, Mark D. Wilkinson, and Ewan Birney, Ewan Birney , 2002
"... Data Type by defining how a given modul wil behave without specifying the mechanism by which it achieves this end. ..."
Abstract - Cited by 484 (11 self) - Add to MetaCart
Data Type by defining how a given modul wil behave without specifying the mechanism by which it achieves this end.

Genomic Expression Programs in the Response of Yeast Cells to Environmental Changes

by Audrey P. Gasch, Paul T. Spellman, Camilla M. Kao, Orna Carmel-Harel, Michael B. Eisen, Gisela Storz, David Botstein, Patrick O. Brown, Pamela A. Silver - Mol. Biol. Cell , 2000
"... this article contains data set material, and is available at www.molbiolcell.org. ..."
Abstract - Cited by 743 (21 self) - Add to MetaCart
this article contains data set material, and is available at www.molbiolcell.org.

Graphical models, exponential families, and variational inference

by Martin J. Wainwright, Michael I. Jordan , 2008
"... The formalism of probabilistic graphical models provides a unifying framework for capturing complex dependencies among random variables, and building large-scale multivariate statistical models. Graphical models have become a focus of research in many statistical, computational and mathematical fiel ..."
Abstract - Cited by 800 (26 self) - Add to MetaCart
likelihoods, marginal probabilities and most probable configurations. We describe how a wide varietyof algorithms — among them sum-product, cluster variational methods, expectation-propagation, mean field methods, max-product and linear programming relaxation, as well as conic programming relaxations — can

Community detection in graphs

by Santo Fortunato , 2009
"... The modern science of networks has brought significant advances to our understanding of complex systems. One of the most relevant features of graphs representing real systems is community structure, or clustering, i. e. the organization of vertices in clusters, with many edges joining vertices of th ..."
Abstract - Cited by 801 (1 self) - Add to MetaCart
The modern science of networks has brought significant advances to our understanding of complex systems. One of the most relevant features of graphs representing real systems is community structure, or clustering, i. e. the organization of vertices in clusters, with many edges joining vertices

Planning Algorithms

by Steven M LaValle , 2004
"... This book presents a unified treatment of many different kinds of planning algorithms. The subject lies at the crossroads between robotics, control theory, artificial intelligence, algorithms, and computer graphics. The particular subjects covered include motion planning, discrete planning, planning ..."
Abstract - Cited by 1108 (51 self) - Add to MetaCart
, planning under uncertainty, sensor-based planning, visibility, decision-theoretic planning, game theory, information spaces, reinforcement learning, nonlinear systems, trajectory planning, nonholonomic planning, and kinodynamic planning.

The emotional dog and its rational tail: a social intuitionist approach to moral judgment

by Jonathan Haidt - Psychological Review , 2001
"... This is the manuscript that was published, with only minor copy-editing alterations, as: Haidt, J. (2001). The emotional dog and its rational tail: A social intuitionist approach to moral judgment. Psychological Review. 108, 814-834 Copyright 2001, American Psychological Association To obtain a repr ..."
Abstract - Cited by 629 (20 self) - Add to MetaCart
This is the manuscript that was published, with only minor copy-editing alterations, as: Haidt, J. (2001). The emotional dog and its rational tail: A social intuitionist approach to moral judgment. Psychological Review. 108, 814-834 Copyright 2001, American Psychological Association To obtain a

Strategies of Discourse Comprehension

by Teun A. Van Dijk, Walter Kintsch , 1983
"... El Salvador, Guatemala is a, study in black and white. On the left is a collection of extreme Marxist-Leninist groups led by what one diplomat calls “a pretty faceless bunch of people.’ ’ On the right is an entrenched elite that has dominated Central America’s most populous country since a CIA-backe ..."
Abstract - Cited by 601 (27 self) - Add to MetaCart
El Salvador, Guatemala is a, study in black and white. On the left is a collection of extreme Marxist-Leninist groups led by what one diplomat calls “a pretty faceless bunch of people.’ ’ On the right is an entrenched elite that has dominated Central America’s most populous country since a CIA
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