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Graphical models, exponential families, and variational inference

by Martin J. Wainwright, Michael I. Jordan , 2008
"... The formalism of probabilistic graphical models provides a unifying framework for capturing complex dependencies among random variables, and building large-scale multivariate statistical models. Graphical models have become a focus of research in many statistical, computational and mathematical fiel ..."
Abstract - Cited by 800 (26 self) - Add to MetaCart
The formalism of probabilistic graphical models provides a unifying framework for capturing complex dependencies among random variables, and building large-scale multivariate statistical models. Graphical models have become a focus of research in many statistical, computational and mathematical

A Separator Theorem for Planar Graphs

by Richard J. Lipton, Robert E. Tarjan , 1977
"... Let G be any n-vertex planar graph. We prove that the vertices of G can be partitioned into three sets A, B, C such that no edge joins a vertex in A with a vertex in B, neither A nor B contains more than 2n/3 vertices, and C contains no more than 2& & vertices. We exhibit an algorithm which ..."
Abstract - Cited by 465 (1 self) - Add to MetaCart
Let G be any n-vertex planar graph. We prove that the vertices of G can be partitioned into three sets A, B, C such that no edge joins a vertex in A with a vertex in B, neither A nor B contains more than 2n/3 vertices, and C contains no more than 2& & vertices. We exhibit an algorithm which

Pfam protein families database

by Robert D. Finn, John Tate, Jaina Mistry, Penny C. Coggill, Stephen John Sammut, Hans-rudolf Hotz, Goran Ceric, Kristoffer Forslund, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman - Nucleic Acids Research, 2008, 36(Database issue): D281–D288
"... Pfam is a comprehensive collection of protein domains and families, represented as multiple sequence alignments and as profile hidden Markov models. The current release of Pfam (22.0) contains 9318 protein families. Pfam is now based not only on the UniProtKB sequence database, but also on NCBI GenP ..."
Abstract - Cited by 748 (13 self) - Add to MetaCart
Pfam is a comprehensive collection of protein domains and families, represented as multiple sequence alignments and as profile hidden Markov models. The current release of Pfam (22.0) contains 9318 protein families. Pfam is now based not only on the UniProtKB sequence database, but also on NCBI Gen

The Structure-Mapping Engine: Algorithm and Examples

by Brian Falkenhainer, Kenneth D. Forbus, Dedre Gentner - Artificial Intelligence , 1989
"... This paper describes the Structure-Mapping Engine (SME), a program for studying analogical processing. SME has been built to explore Gentner's Structure-mapping theory of analogy, and provides a "tool kit" for constructing matching algorithms consistent with this theory. Its flexibili ..."
Abstract - Cited by 512 (115 self) - Add to MetaCart
This paper describes the Structure-Mapping Engine (SME), a program for studying analogical processing. SME has been built to explore Gentner's Structure-mapping theory of analogy, and provides a "tool kit" for constructing matching algorithms consistent with this theory. Its

New Directions in Cryptography

by Whitfield Diffie, Martin E. Hellman , 1976
"... Two kinds of contemporary developments in cryptography are examined. Widening applications of teleprocessing have given rise to a need for new types of cryptographic systems, which minimize the need for secure key distribution channels and supply the equivalent of a written signature. This paper sug ..."
Abstract - Cited by 3499 (7 self) - Add to MetaCart
Two kinds of contemporary developments in cryptography are examined. Widening applications of teleprocessing have given rise to a need for new types of cryptographic systems, which minimize the need for secure key distribution channels and supply the equivalent of a written signature. This paper

bijective

by Guillaume Chapuy , 2010
"... new combinatorial identity for unicellular maps, via a direct ..."
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new combinatorial identity for unicellular maps, via a direct

A Framework for Dynamic Graph Drawing

by Robert F. Cohen, G. Di Battista, R. Tamassia, Ioannis G. Tollis - CONGRESSUS NUMERANTIUM , 1992
"... Drawing graphs is an important problem that combines flavors of computational geometry and graph theory. Applications can be found in a variety of areas including circuit layout, network management, software engineering, and graphics. The main contributions of this paper can be summarized as follows ..."
Abstract - Cited by 627 (44 self) - Add to MetaCart
as follows: ffl We devise a model for dynamic graph algorithms, based on performing queries and updates on an implicit representation of the drawing, and we show its applications. ffl We present several efficient dynamic drawing algorithms for trees, series-parallel digraphs, planar st-digraphs, and planar

Thresholding of statistical maps in functional neuroimaging using the false discovery rate

by Christopher R. Genovese, Nicole A. Lazar, Thomas Nichols - Neuroimage , 2002
"... Finding objective and effective thresholds for voxelwise statistics derived from neuroimaging data has been a long-standing problem. With at least one test performed for every voxel in an image, some correction of the thresholds is needed to control the error rates, but standard procedures for multi ..."
Abstract - Cited by 494 (8 self) - Add to MetaCart
Finding objective and effective thresholds for voxelwise statistics derived from neuroimaging data has been a long-standing problem. With at least one test performed for every voxel in an image, some correction of the thresholds is needed to control the error rates, but standard procedures

From genomics to chemical genomics: new developments in KEGG

by Minoru Kanehisa, Susumu Goto, Masahiro Hattori, Kiyoko F. Aoki-kinoshita, Masumi Itoh, Shuichi Kawashima, Toshiaki Katayama, Michihiro Araki, Mika Hirakawa - Nucleic Acids Res , 2006
"... The increasing amount of genomic and molecular information is the basis for understanding higherorder biological systems, such as the cell and the 15 organism, and their interactions with the environment, as well as for medical, industrial and other practical applications. The KEGG resource ..."
Abstract - Cited by 517 (30 self) - Add to MetaCart
The increasing amount of genomic and molecular information is the basis for understanding higherorder biological systems, such as the cell and the 15 organism, and their interactions with the environment, as well as for medical, industrial and other practical applications. The KEGG resource

New bijective links on planar maps

by Eric Fusy , 2008
"... This article describes new bijective links on planar maps, which are of incremental complexity and present original features. The first two bijections Φ1,2 are correspondences on oriented planar maps. They can be considered as variations on the classical edge-poset construction for bipolar orientat ..."
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orientations on graphs, suitably adapted so as to operate only on the embeddings in a simple local way. In turn, Φ1,2 yield two new bijections F1,2 between families of (rooted) maps. (i) By identifying maps with specific constrained orientations, Φ2 ◦ Φ1 specialises to a bijection F1 between 2-connected maps
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