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781,067
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
, 2003
"... The increase in the number of large data sets and the complexity of current probabilistic sequence evolution models necessitates fast and reliable phylogeny reconstruction methods. We describe a new approach, based on the maximumlikelihood principle, which clearly satisfies these requirements. The ..."
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Cited by 2109 (30 self)
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of distancebased and parsimony approaches. The reduction of computing time is dramatic in comparison with other maximumlikelihood packages, while the likelihood maximization ability tends to be higher. For example, only 12 min were required on a standard personal computer to analyze a data set consisting
Maximum Likelihood Phylogenetic Estimation from DNA Sequences with Variable Rates over Sites: Approximate Methods
 J. Mol. Evol
, 1994
"... Two approximate methods are proposed for maximum likelihood phylogenetic estimation, which allow variable rates of substitution across nucleotide sites. Three data sets with quite different characteristics were analyzed to examine empirically the performance of these methods. The first, called ..."
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Cited by 540 (28 self)
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Two approximate methods are proposed for maximum likelihood phylogenetic estimation, which allow variable rates of substitution across nucleotide sites. Three data sets with quite different characteristics were analyzed to examine empirically the performance of these methods. The first, called
A Maximum Entropy approach to Natural Language Processing
 COMPUTATIONAL LINGUISTICS
, 1996
"... The concept of maximum entropy can be traced back along multiple threads to Biblical times. Only recently, however, have computers become powerful enough to permit the widescale application of this concept to real world problems in statistical estimation and pattern recognition. In this paper we des ..."
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Cited by 1341 (5 self)
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describe a method for statistical modeling based on maximum entropy. We present a maximumlikelihood approach for automatically constructing maximum entropy models and describe how to implement this approach efficiently, using as examples several problems in natural language processing.
Symmetry and Related Properties via the Maximum Principle
, 1979
"... We prove symmetry, and some related properties, of positive solutions of second order elliptic equations. Our methods employ various forms of the maximum principle, and a device of moving parallel planes to a critical position, and then showing that the solution is symmetric about the limiting plan ..."
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Cited by 539 (4 self)
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We prove symmetry, and some related properties, of positive solutions of second order elliptic equations. Our methods employ various forms of the maximum principle, and a device of moving parallel planes to a critical position, and then showing that the solution is symmetric about the limiting
Reducing Multiclass to Binary: A Unifying Approach for Margin Classifiers
 JOURNAL OF MACHINE LEARNING RESEARCH
, 2000
"... We present a unifying framework for studying the solution of multiclass categorization problems by reducing them to multiple binary problems that are then solved using a marginbased binary learning algorithm. The proposed framework unifies some of the most popular approaches in which each class ..."
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Cited by 560 (20 self)
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We present a unifying framework for studying the solution of multiclass categorization problems by reducing them to multiple binary problems that are then solved using a marginbased binary learning algorithm. The proposed framework unifies some of the most popular approaches in which each class
Maximum entropy markov models for information extraction and segmentation
, 2000
"... Hidden Markov models (HMMs) are a powerful probabilistic tool for modeling sequential data, and have been applied with success to many textrelated tasks, such as partofspeech tagging, text segmentation and information extraction. In these cases, the observations are usually modeled as multinomial ..."
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Cited by 554 (18 self)
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as multinomial distributions over a discrete vocabulary, and the HMM parameters are set to maximize the likelihood of the observations. This paper presents a new Markovian sequence model, closely related to HMMs, that allows observations to be represented as arbitrary overlapping features (such as word
Estimating Continuous Distributions in Bayesian Classifiers
 In Proceedings of the Eleventh Conference on Uncertainty in Artificial Intelligence
, 1995
"... When modeling a probability distribution with a Bayesian network, we are faced with the problem of how to handle continuous variables. Most previous work has either solved the problem by discretizing, or assumed that the data are generated by a single Gaussian. In this paper we abandon the normality ..."
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Cited by 489 (2 self)
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When modeling a probability distribution with a Bayesian network, we are faced with the problem of how to handle continuous variables. Most previous work has either solved the problem by discretizing, or assumed that the data are generated by a single Gaussian. In this paper we abandon
Estimating the Support of a HighDimensional Distribution
, 1999
"... Suppose you are given some dataset drawn from an underlying probability distribution P and you want to estimate a "simple" subset S of input space such that the probability that a test point drawn from P lies outside of S is bounded by some a priori specified between 0 and 1. We propo ..."
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Cited by 766 (29 self)
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Suppose you are given some dataset drawn from an underlying probability distribution P and you want to estimate a "simple" subset S of input space such that the probability that a test point drawn from P lies outside of S is bounded by some a priori specified between 0 and 1. We
Model selection through sparse maximum likelihood estimation
 Journal of Machine Learning Research
, 2008
"... We consider the problem of estimating the parameters of a Gaussian or binary distribution in such a way that the resulting undirected graphical model is sparse. Our approach is to solve a maximum likelihood problem with an added ℓ1norm penalty term. The problem as formulated is convex but the memor ..."
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Cited by 337 (2 self)
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We consider the problem of estimating the parameters of a Gaussian or binary distribution in such a way that the resulting undirected graphical model is sparse. Our approach is to solve a maximum likelihood problem with an added ℓ1norm penalty term. The problem as formulated is convex
Mixed MNL Models for Discrete Response
 JOURNAL OF APPLIED ECONOMETRICS
, 2000
"... This paper considers mixed, or random coefficients, multinomial logit (MMNL) models for discrete response, and establishes the following results: Under mild regularity conditions, any discrete choice model derived from random utility maximization has choice probabilities that can be approximated as ..."
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Cited by 466 (14 self)
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as closely as one pleases by a MMNLmodel. Practical estimation of a parametric mixing family can be carried out by Maximum Simulated Likelihood Estimation or Method of Simulated Moments, and easily computed instruments are provided that make the latter procedure fairly efficient. The adequacy of a mixing
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