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New Algorithms for the DuplicationLoss Model
 In RECOMB2000, Fourth Annual International Conference on Computational Molecular Biology
, 1999
"... We consider the problem of constructing a species tree given a number of gene trees. In the frameworks introduced by Goodman et al. [3], Page [10], and Guig'o, Muchnik, and Smith [5] this is formulated as an optimization problem; namely, that of finding the species tree requiring the minimumnum ..."
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Cited by 57 (5 self)
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We consider the problem of constructing a species tree given a number of gene trees. In the frameworks introduced by Goodman et al. [3], Page [10], and Guig'o, Muchnik, and Smith [5] this is formulated as an optimization problem; namely, that of finding the species tree requiring
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
, 2003
"... The increase in the number of large data sets and the complexity of current probabilistic sequence evolution models necessitates fast and reliable phylogeny reconstruction methods. We describe a new approach, based on the maximumlikelihood principle, which clearly satisfies these requirements. The ..."
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Cited by 2109 (30 self)
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The increase in the number of large data sets and the complexity of current probabilistic sequence evolution models necessitates fast and reliable phylogeny reconstruction methods. We describe a new approach, based on the maximumlikelihood principle, which clearly satisfies these requirements
Abstract New Algorithms for the DuplicationLoss Model
"... We consider the problem of constructing a species tree given a number of gene trees. In the frameworks introduced by Goodman et al. [3], Page [10], and Guig6, Muchnik, and Smith [5] this is formulated as an optimization problem; namely, that of finding the species tree requiring the minimum number ..."
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number of duplications and/ or losses in order to explain the gene trees. In this paper, we introduce the WIDTH k DUPLICATIONLOSS and WIDTH k DUPLICATION problems. A gene tree has width k w.r.t, a species tree, if the species tree can be reconciled with the gene tree using at most k simultaneously
Planning Algorithms
, 2004
"... This book presents a unified treatment of many different kinds of planning algorithms. The subject lies at the crossroads between robotics, control theory, artificial intelligence, algorithms, and computer graphics. The particular subjects covered include motion planning, discrete planning, planning ..."
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Cited by 1108 (51 self)
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This book presents a unified treatment of many different kinds of planning algorithms. The subject lies at the crossroads between robotics, control theory, artificial intelligence, algorithms, and computer graphics. The particular subjects covered include motion planning, discrete planning
An iterative thresholding algorithm for linear inverse problems with a sparsity constraint
, 2008
"... ..."
A Limited Memory Algorithm for Bound Constrained Optimization
 SIAM Journal on Scientific Computing
, 1994
"... An algorithm for solving large nonlinear optimization problems with simple bounds is described. ..."
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Cited by 557 (9 self)
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An algorithm for solving large nonlinear optimization problems with simple bounds is described.
An Efficient Boosting Algorithm for Combining Preferences
, 1999
"... The problem of combining preferences arises in several applications, such as combining the results of different search engines. This work describes an efficient algorithm for combining multiple preferences. We first give a formal framework for the problem. We then describe and analyze a new boosting ..."
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Cited by 707 (18 self)
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The problem of combining preferences arises in several applications, such as combining the results of different search engines. This work describes an efficient algorithm for combining multiple preferences. We first give a formal framework for the problem. We then describe and analyze a new
A training algorithm for optimal margin classifiers
 PROCEEDINGS OF THE 5TH ANNUAL ACM WORKSHOP ON COMPUTATIONAL LEARNING THEORY
, 1992
"... A training algorithm that maximizes the margin between the training patterns and the decision boundary is presented. The technique is applicable to a wide variety of classifiaction functions, including Perceptrons, polynomials, and Radial Basis Functions. The effective number of parameters is adjust ..."
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Cited by 1848 (44 self)
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A training algorithm that maximizes the margin between the training patterns and the decision boundary is presented. The technique is applicable to a wide variety of classifiaction functions, including Perceptrons, polynomials, and Radial Basis Functions. The effective number of parameters
The Macroscopic Behavior of the TCP Congestion Avoidance Algorithm
, 1997
"... In this paper, we analyze a performance model for the TCP Congestion Avoidance algorithm. The model predicts the bandwidth of a sustained TCP connection subjected to light to moderate packet losses, such as loss caused by network congestion. It assumes that TCP avoids retransmission timeouts and alw ..."
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Cited by 648 (18 self)
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In this paper, we analyze a performance model for the TCP Congestion Avoidance algorithm. The model predicts the bandwidth of a sustained TCP connection subjected to light to moderate packet losses, such as loss caused by network congestion. It assumes that TCP avoids retransmission timeouts
SNOPT: An SQP Algorithm For LargeScale Constrained Optimization
, 2002
"... Sequential quadratic programming (SQP) methods have proved highly effective for solving constrained optimization problems with smooth nonlinear functions in the objective and constraints. Here we consider problems with general inequality constraints (linear and nonlinear). We assume that first deriv ..."
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Cited by 582 (23 self)
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Sequential quadratic programming (SQP) methods have proved highly effective for solving constrained optimization problems with smooth nonlinear functions in the objective and constraints. Here we consider problems with general inequality constraints (linear and nonlinear). We assume that first
Results 1  10
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