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A Fast Algorithm for Optimal Alignment Between Similar Ordered Trees
 Fundamenta Informaticae
, 2001
"... . We present a fast algorithm for optimal alignment between two similar ordered trees with node labels. Let S and T be two such trees with jSj and jT j nodes, respectively. An optimal alignment between S and T which uses at most d blank symbols can be constructed in O(n log n (maxdeg) 4 d 2 ..."
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Cited by 14 (3 self)
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. We present a fast algorithm for optimal alignment between two similar ordered trees with node labels. Let S and T be two such trees with jSj and jT j nodes, respectively. An optimal alignment between S and T which uses at most d blank symbols can be constructed in O(n log n (maxdeg) 4 d
IOS Press A Fast Algorithm for Optimal Alignment between Similar Ordered Trees
"... Abstract. We present a fast algorithm for optimal alignment between two similar ordered trees with node labels. Let ¢ and £ be two such trees with ¤ ¢ ¤ and ¤ £ ¤ nodes, respectively. If there exists an optimal alignment between ¢ and £ which uses at most ¥ blank symbols and ¥ is known in advance, ..."
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Abstract. We present a fast algorithm for optimal alignment between two similar ordered trees with node labels. Let ¢ and £ be two such trees with ¤ ¢ ¤ and ¤ £ ¤ nodes, respectively. If there exists an optimal alignment between ¢ and £ which uses at most ¥ blank symbols and ¥ is known in advance
A greedy algorithm for aligning DNA sequences
 J. COMPUT. BIOL
, 2000
"... For aligning DNA sequences that differ only by sequencing errors, or by equivalent errors from other sources, a greedy algorithm can be much faster than traditional dynamic programming approaches and yet produce an alignment that is guaranteed to be theoretically optimal. We introduce a new greedy a ..."
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Cited by 576 (16 self)
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For aligning DNA sequences that differ only by sequencing errors, or by equivalent errors from other sources, a greedy algorithm can be much faster than traditional dynamic programming approaches and yet produce an alignment that is guaranteed to be theoretically optimal. We introduce a new greedy
Fast Algorithms for Mining Association Rules
, 1994
"... We consider the problem of discovering association rules between items in a large database of sales transactions. We present two new algorithms for solving this problem that are fundamentally different from the known algorithms. Empirical evaluation shows that these algorithms outperform the known a ..."
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Cited by 3551 (15 self)
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We consider the problem of discovering association rules between items in a large database of sales transactions. We present two new algorithms for solving this problem that are fundamentally different from the known algorithms. Empirical evaluation shows that these algorithms outperform the known
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
, 2003
"... The increase in the number of large data sets and the complexity of current probabilistic sequence evolution models necessitates fast and reliable phylogeny reconstruction methods. We describe a new approach, based on the maximumlikelihood principle, which clearly satisfies these requirements. The ..."
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Cited by 2109 (30 self)
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. The core of this method is a simple hillclimbing algorithm that adjusts tree topology and branch lengths simultaneously. This algorithm starts from an initial tree built by a fast distancebased method and modifies this tree to improve its likelihood at each iteration. Due to this simultaneous adjustment
A Fast Algorithm for Particle Simulations
, 1987
"... this paper to the case where the potential (or force) at a point is a sum of pairwise An algorithm is presented for the rapid evaluation of the potential and force fields in systems involving large numbers of particles interactions. More specifically, we consider potentials of whose interactions a ..."
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Cited by 1145 (19 self)
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are Coulombic or gravitational in nature. For a the form system of N particles, an amount of work of the order O(N 2 ) has traditionally been required to evaluate all pairwise interactions, un F5F far 1 (F near 1F external ), less some approximation or truncation method is used. The algorithm of the present
Multiple sequence alignment with the Clustal series of programs
 Nucleic Acids Res
, 2003
"... The Clustal series of programs are widely used in molecular biology for the multiple alignment of both nucleic acid and protein sequences and for preparing phylogenetic trees. The popularity of the programs depends on a number of factors, including not only the accuracy of the results, but also the ..."
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Cited by 725 (5 self)
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The Clustal series of programs are widely used in molecular biology for the multiple alignment of both nucleic acid and protein sequences and for preparing phylogenetic trees. The popularity of the programs depends on a number of factors, including not only the accuracy of the results, but also
PROMPT: Algorithm and Tool for Automated Ontology Merging and Alignment
, 2000
"... Researchers in the ontologydesign field have developed the content for ontologies in many domain areas. Recently, ontologies have become increasingly common on the WorldWide Web where they provide semantics for annotations in Web pages. This distributed nature of ontology development has led t ..."
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Cited by 495 (12 self)
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to a large number of ontologies covering overlapping domains. In order for these ontologies to be reused, they first need to be merged or aligned to one another. The processes of ontology alignment and merging are usually handled manually and often constitute a large and tedious portion
Improved Statistical Alignment Models
 In Proceedings of the 38th Annual Meeting of the Association for Computational Linguistics
, 2000
"... In this paper, we present and compare various singleword based alignment models for statistical machine translation. We discuss the five IBM alignment models, the HiddenMarkov alignment model, smoothing techniques and various modifications. ..."
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Cited by 593 (13 self)
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In this paper, we present and compare various singleword based alignment models for statistical machine translation. We discuss the five IBM alignment models, the HiddenMarkov alignment model, smoothing techniques and various modifications.
Fast Parallel Algorithms for ShortRange Molecular Dynamics
 JOURNAL OF COMPUTATIONAL PHYSICS
, 1995
"... Three parallel algorithms for classical molecular dynamics are presented. The first assigns each processor a fixed subset of atoms; the second assigns each a fixed subset of interatomic forces to compute; the third assigns each a fixed spatial region. The algorithms are suitable for molecular dyn ..."
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Cited by 622 (6 self)
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Three parallel algorithms for classical molecular dynamics are presented. The first assigns each processor a fixed subset of atoms; the second assigns each a fixed subset of interatomic forces to compute; the third assigns each a fixed spatial region. The algorithms are suitable for molecular
Results 1  10
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