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A knowledge representation framework for integration, classification of multi-scale imaging and non-imaging data: Preliminary results in predicting prostate cancer recurrence by fusing mass spectrometry and histology

by George Lee , Scott Doyle , James Monaco , Anant Madabhushi , Michael D Feldman , Stephen R Master , John E Tomaszewski - in [Biomedical Imaging: From Nano to Macro, 2009. ISBI’09. IEEE International Symposium on ], 77–80, IEEE , 2009
"... ABSTRACT The demand for personalized health care requires a wide range of diagnostic tools for determining patient prognosis and theragnosis (response to treatment). These tools present us with data that is both multi-modal (imaging and non-imaging) and multi-scale (proteomics, histology). By utili ..."
Abstract - Cited by 3 (1 self) - Add to MetaCart
present a general fusion framework (GFF) aimed towards a combined knowledge representation predicting disease recurrence. To the best of our knowledge, GFF represents the first formal attempt to fuse biomedical image and non-image information directly at the data level as opposed to the decision level

Leveraging archival video for building face datasets

by Deva Ramanan, Simon Baker, Sham Kakade
"... We introduce a semi-supervised method for building large, labeled datasets of faces by leveraging archival video. Specifically, we have implemented a system for labeling 11 years worth of archival footage from a television show. We have compiled a dataset of 611,770 faces, orders of magnitude larger ..."
Abstract - Cited by 32 (0 self) - Add to MetaCart
in the video sequences. From a data-collection point of view, tracking is vital because it adds non-frontal poses to our face collection. This is important because we know of no other method for collecting images of non-frontal faces “in the wild”. 1.

The DICOM (Digital Imaging and Communications

by unknown authors
"... for Medicine) standard1 is a non-proprietary data interchange protocol, digital image format, and file structure for image and image-related information. It is typically used in radiology, cardiology, and similar imaging-intensive departments. DICOM is used in these contexts to integrate and facilit ..."
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for Medicine) standard1 is a non-proprietary data interchange protocol, digital image format, and file structure for image and image-related information. It is typically used in radiology, cardiology, and similar imaging-intensive departments. DICOM is used in these contexts to integrate

K I J I ISCA Archive TEXT-INDEPENDENT SPEAKER VERIFICATION USING SUPPORT VECTOR MACHINES

by Jamal Kharroubi, Dijana Petrovska-delacrétaz, Gérard Chollet
"... In this article we address the issue of using the Support Vector Learning technique in combination with the currently well performing Gaussian Mixture Models (GMM) for speaker verification experiments. Support Vector Machines (SVM) is a new and very promising technique in statistical learning theory ..."
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’ speech signal are given as input vectors to train the speaker specific SVM’s. In this work, we propose a new feature representation based on GMM to construct the input vectors to train the SVM to discriminate the true-target speaker access class from the non-target speaker access class. The results

SÜSSE ET AL.: ODOB OPERATORS FOR BLOOD VESSEL SEGMENTATION IN CLE IMAGES1 Oriented Differences of Boxes Operators for Blood Vessel Segmentation and Analysis in Confocal Laser Endomicroscopy Images with minimal User Interaction

by Herbert Süße, Wolfgang Ortmann, Christian Lautenschläger, Marco Körner, Carsten Schmidt, Andreas Stallmach, Joachim Denzler
"... Despite of an increasing use of Confocal Laser Endomicroscopy (CLE) in gastroen-terology, an objective interpretation of this data is not established and its processing still states a very difficult task due to the high amount of noise and motion blur shown in these images. Nevertheless, this imagin ..."
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Despite of an increasing use of Confocal Laser Endomicroscopy (CLE) in gastroen-terology, an objective interpretation of this data is not established and its processing still states a very difficult task due to the high amount of noise and motion blur shown in these images. Nevertheless

Madabhushi A. Spectral embedding based probabilistic boosting tree (ScEPTre): classifying high dimensional heterogeneous biomedical data. Med Image Comput Comput Assist Interv. 2009; 12:844–851. [PubMed: 20426190

by Pallavi Tiwari , Mark Rosen , Galen Reed , John Kurhanewicz , Anant Madabhushi
"... Abstract. The major challenge with classifying high dimensional biomedical data is in identifying the appropriate feature representation to (a) overcome the curse of dimensionality, and (b) facilitate separation between the data classes. Another challenge is to integrate information from two dispar ..."
Abstract - Cited by 3 (0 self) - Add to MetaCart
) for data representation and integration and a Probabilistic Boosting Tree classifier for data classification. SE provides an alternate representation of the data by non-linearly transforming high dimensional data into a low dimensional embedding space such that the relative adjacencies between objects

Supervised Multi-View Canonical Correlation Analysis: Fused Multimodal Prediction of Disease Diagnosis and Prognosis

by Asha Singanamallia, Haibo Wang A, George Lee A, Natalie Shih B, Mark Rosen B, Master B, John Tomasewski C, Michael Feldman B, Anant Madabhushia
"... While the plethora of information from multiple imaging and non-imaging data streams presents an opportunity for discovery of fused multimodal, multiscale biomarkers, they also introduce multiple independent sources of noise that hinder their collective utility. The goal of this work is to create fu ..."
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While the plethora of information from multiple imaging and non-imaging data streams presents an opportunity for discovery of fused multimodal, multiscale biomarkers, they also introduce multiple independent sources of noise that hinder their collective utility. The goal of this work is to create

MRI- Mammography 2D/3D Data Fusion for Breast Pathology Assessment

by Christian P. Behrenbruch, Kostas Marias, Paul A. Armitage, Margaret Yam, Niall Moore, Ruth E. English, J. Michael Brady
"... Abstract. Increasing use is being made of contrast-enhanced Magnetic Resonance Imaging (Gd-DTPA) for breast cancer assessment since it provides 3D functional information via pharmacokinetic interaction between contrast agent and tumour vascularity, and because it is applicable to women of all ages. ..."
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Abstract. Increasing use is being made of contrast-enhanced Magnetic Resonance Imaging (Gd-DTPA) for breast cancer assessment since it provides 3D functional information via pharmacokinetic interaction between contrast agent and tumour vascularity, and because it is applicable to women of all ages

1 X-ray Categorization and Retrieval on the Organ and Pathology Level, Using Patch-Based Visual Words

by Uri Avni, Hayit Greenspan, Eli Konen, Michal Sharon, Jacob Goldberger
"... Abstract—In this study we present an efficient image categorization and retrieval system applied to medical image databases, in particular large radiograph archives. The methodology is based on local patch representation of the image content, using a “bag of visual words ” approach. We explore the e ..."
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Abstract—In this study we present an efficient image categorization and retrieval system applied to medical image databases, in particular large radiograph archives. The methodology is based on local patch representation of the image content, using a “bag of visual words ” approach. We explore

Perspective An Online Bioinformatics Curriculum

by David B. Searls
"... Abstract: Online learning initia-tives over the past decade have become increasingly comprehen-sive in their selection of courses and sophisticated in their presen-tation, culminating in the recent announcement of a number of consortium and startup activities that promise to make a university educat ..."
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Abstract: Online learning initia-tives over the past decade have become increasingly comprehen-sive in their selection of courses and sophisticated in their presen-tation, culminating in the recent announcement of a number of consortium and startup activities that promise to make a university education on the internet, free of charge, a real possibility. At this pivotal moment it is appropriate to explore the potential for obtaining comprehensive bioinformatics training with currently existing free video resources. This article pre-sents such a bioinformatics curric-ulum in the form of a virtual course catalog, together with editorial commentary, and an assessment of strengths, weaknesses, and likely future directions for open online learning in this field. Online Learning Comes of Age Online academic ‘‘courseware’ ’ at the university level has now been available to the public for a decade, the earliest concerted effort having originated in 2002 with the Massachusetts Institute of Technology (MIT) and their OpenCour-seWare initiative
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