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Table 3: Comparison between the optical maps and the in silico maps from the TIGR pseudomolecules of rice genome sequence

in unknown title
by unknown authors 2007
"... In PAGE 10: ...aps (Fig. 5A and 5B). The alignments between optical maps and the TIGR sequence pseudomolecules, (Meth- ods), identified 24,716 SwaI congruent restriction sites, 48 false cuts, 454 missing cuts, and 744 missing small fragments (mostly less than 1 kb) within the optical con- sensus map data. The alignments also identified 23 telo- meric gaps with a total size of 4,255 kb, 11 centromeric gaps with a total estimated size of 5,801 kb, 38 non-cen- tromeric sequence gaps filled by optical maps with a total size of 1,503 kb, and 93 new gaps (not including centro- meric and telomeric gaps) called within the sequence based on the map alignments with a total size of 1,877 kb ( Table3 , Fig.... In PAGE 14: ...artly characterized (Fig. 2 and Fig. 4). Accordingly, com- parisons of optical map findings for the centromeric region of chromosome 8 against IRGSP and TIGR results showed that a ~24 kb gap still exists both in the IRGSP and TIGR pseudomolecules (Table 2, and Table3 ), while chromosome 4 showed no discordances. Conclusion A whole-genome SwaI restriction map of rice genome was constructed and comparison between the in silico maps of rice chromosome pseudomolecule sequences revealed not only gap characteristics, but also putatively misassembled parts of the genome sequence.... ..."

TABLE 7. In silico results compared to experimental results for the essentiality of 17 genes in the modela

in Genome-Scale Metabolic Model of Helicobacter pylori 26695
by Genome-Scale Metabolic Model of Helicobacter pylori 26695 Christophe H. Schilling, Christophe H. Schilling, Markus W. Covert, Iman Famili, George M. Church, Jeremy S. Edwards, Bernhard O. Palsson 2002
Cited by 10

TABLE 2. Comparison of genomic characteristics and in silico metabolic model characteristics of H. pylori and H. influenzae (63)

in Genome-Scale Metabolic Model of Helicobacter pylori 26695
by Genome-Scale Metabolic Model of Helicobacter pylori 26695 Christophe H. Schilling, Christophe H. Schilling, Markus W. Covert, Iman Famili, George M. Church, Jeremy S. Edwards, Bernhard O. Palsson 2002
Cited by 10

Table 4: Half-Life of Top k Search Results Type Top

in Agreeing to disagree: Search engines and their public interfaces
by Frank Mccown 2007
"... In PAGE 7: ...5. The observed and predicted half-lives for each search en- gine is presented in Table4 . For top 100 results, the pre- dicted half-lives for both interfaces lie close to each other.... ..."
Cited by 2

Table 1. Comparison summary table Technology 1 Technology 2

in DRUG DISCOVERY TODAY TECHNOLOGIES Drug Discovery Today: Technologies
by William J. Egan, Gregor Zlokarnik, Peter D. J. Grootenhuis
"... In PAGE 3: ... Based on current feedback, the effort appears to be successful. Table1 compares several of the models discussed in the previous two sections. In silico prediction of P450 inhibition In addition to organ toxicity, candidate drugs can run afoul by potentlybindingtopromiscuousproteins,suchascytochrome P450s.... ..."

Table 1. In silico prediction by the SIFT and PolyPhen programs of the deleterious effects of amino acid substitutions coded by TNFRSF1A and MEFV genes.

in In Silico Prediction of the Deleterious Effect of a Mutation: Proceed with Caution in Clinical Genetics
by unknown authors
"... In PAGE 3: ... Thirty- two (84.2%) were predicted as deleterious/damaging by both programs ( Table1 ). Y20D, H22Y, and T37I variants are returned as non deleterious by the SIFT program, and Y20H is benign in the PolyPhen program.... In PAGE 4: ...programs ( Table1 ). Nevertheless, these private se- quence variants are rarely found in FMF patients.... ..."

TABLE 1. Comparison of in silico-predicted number of M. tuberculosis MseI/EcoRI fragments with actual number of fragments detected by FAFLP analysisa

in Experimental versus In Silico Fluorescent Amplified Fragment Length Polymorphism Analysis of Mycobacterium tuberculosis: Improved Typing with an Extended Fragment Range
by Elizabeth J. Sims, Madhu Goyal, Catherine Arnold 2002

TABLE 2. Fragments predicted in silico and generated by FAFLP analysis of M. tuberculosis strain H37Rv using MseI H11001 TA selective primer and EcoRI nonselective primer

in Experimental versus In Silico Fluorescent Amplified Fragment Length Polymorphism Analysis of Mycobacterium tuberculosis: Improved Typing with an Extended Fragment Range
by Elizabeth J. Sims, Madhu Goyal, Catherine Arnold 2002

Table 1 shows the results of the study. For each model, the optimal parameters and a measure of the model apos;s average error are presented. Average error provides a single measure of performance that can be used to compare models, it is defined below.

in Investigating The Performance Of Several Aac User Models
by Bryan J. Moulton, Gregory W. Lesher, D. Jeffery Higginbotham, Ph. D, Ph. D
"... In PAGE 3: ... error: 32.62% Table1 : User model parameter estimation results DISCUSSION The average errors of models 2-4 is significantly less than that for model 1, with the most sophisticated (model 4) yielding an improvement of 9.85 and 15.... ..."

Table 1: Number of negative and positive signals predicted by in silico analysis and recorded by comparative genome hybridization on StaphChip for N315, Mu50, or COL targets. Differences between expected and recorded signals are also shown.

in unknown title
by unknown authors 2005
"... In PAGE 4: ... The number of probes predicted to detect genomic ele- ments from each S. aureus strain was compared to those experimentally recorded using StaphChip ( Table1 ). For each strain, gt;99.... ..."
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