Prediction Of Rna Base Pairing Probabilities Using Massively Parallel Computers

Prediction Of Rna Base Pairing Probabilities Using Massively Parallel Computers (1999)

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by M. Fekete , I. L. Hofacker , P. F. Stadler

Venue:	J. Comp. Biol
Citations:	2 - 1 self

BibTeX

@ARTICLE{Fekete99predictionof,
    author = {M. Fekete and I. L. Hofacker and P. F. Stadler},
    title = {Prediction Of Rna Base Pairing Probabilities Using Massively Parallel Computers},
    journal = {J. Comp. Biol},
    year = {1999}
}

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Abstract

this document are those of the authors and should not be interpreted as necessarily representing the o#cial policies or endorsements, either expressed or implied, of Phillips Laboratory or the U.S. Government." Access to the CACR facility was provided by the California Institute of Technology in the context of a collaboration with Paul E. Stolorz. Partial financial support by the Austrian 10

Citations

329	Fast folding and comparison of RNA secondary structures - Hofacker, Fontana, et al. - 1994
233	The equilibrium partition function and base pair binding probabilities for RNA secondary structures - McCaskill - 1990
150	RNA secondary structures and their prediction - Zuker, Sankoff - 1984
140	On finding all suboptimal foldings of an RNA molecule - Zuker - 1989
77	MS: RNA secondary structure: A complete mathematical analysis - TF, Waterman - 1978
51	Optimal computer folding of larger RNA sequences using thermodynamics and auxiliary information - Zuker, Stiegler - 1981
51	Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding - Walter, Turner, et al. - 1994
39	Automatic detection of conserved RNA structure elements in complete RNA virus genomes - Hofacker, Fekete, et al. - 1998
31	Automatic detection of conserved base pairing patterns in RNA virus genomes - Hofacker, Stadler - 1999
20	Knowledge discovery in RNA sequence families of HIV using scalable computers - Hofacker, Huynen, et al. - 1996
17	The HIV-1 rev trans-activator acts through a structured target sequence to activate nuclear export of unspliced viral mRNA - Malim, Hauber, et al. - 1989
15	Spontaneous and engineered deletions in the 3’ noncoding region of tick-borne encephalitis virus: construction of highly attenuated mutants of a flavivirus - Mandl, Holzmann, et al. - 1998
11	Evolutionary characteristics of RNA: inferring higher-order structure from patterns of sequence variation - Gutell - 1993
10	RNA secondary structure prediction using highly parallel computers - Nakaya, Yamamoto, et al. - 1995
10	A molecular rheostat. Co-operative rev binding to stem I of the rev-response element modulates human immunodeficiency virus type-1 late gene expression - DA, Mikaelian, et al. - 1994
7	RNA folding and parallel computers: The minimum free energy structures of complete HIV genomes - Hofacker, Huynen, et al. - 1996
7	Coexistence of multiple codes in messenger RNA molecules - Konings - 1992
6	Extensive sequence-specific information throughout the CAR/RRE, the target sequence of the human immunodeficiency virus type 1 Rev protein - Dayton, Konings, et al. - 1992
6	Panhandles and hairpin structures at the termini of germiston virus RNAs (bunyavirus - Paradigon, Girard, et al. - 1982
2	Optimization and performance analysis of a massively parallel dynamic programming algorithm for RNA secondary structure prediction - Shapiro, Chen, et al. - 1995
2	RNA secondary structure prediction using parallel computers - Fekete - 1997
2	Base pairing probabilities in a complete HIV-1RNA - Huynen, Perelson, et al. - 1996