Abstract

PVM and other distributed computing systems have enabled the use of networks of workstations for parallel computation, but their approach of treating a network as a collection of point-to-point connections does not promote efficient communication--- particularly collective communication. ECO is a package which solves this problem with programs which analyze the network and establish efficient communication patterns which are used by a library of collective operations. The analysis is done off-line, so that after paying the one-time cost of analyzing the network, the execution of application programs is not delayed. This paper gives performance results from using ECO to implement the collective communication in CHARMM, a widely used macromolecular dynamics package. ECO facilitates the development of data parallel applications by providing a simple interface to routines which use the available heterogeneous networks efficiently. This approach gives a naive programmer the abili...

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