## Compressed suffix trees with full functionality

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Venue: | Theory of Computing Systems |

Citations: | 53 - 5 self |

### BibTeX

@ARTICLE{Sadakane_compressedsuffix,

author = {Kunihiko Sadakane},

title = {Compressed suffix trees with full functionality},

journal = {Theory of Computing Systems},

year = {},

pages = {2007}

}

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### Abstract

We introduce new data structures for compressed suffix trees whose size are linear in the text size. The size is measured in bits; thus they occupy only O(n log |A|) bits for a text of length n on an alphabet A. This is a remarkable improvement on current suffix trees which require O(n log n) bits. Though some components of suffix trees have been compressed, there is no linear-size data structure for suffix trees with full functionality such as computing suffix links, string-depths and lowest common ancestors. The data structure proposed in this paper is the first one that has linear size and supports all operations efficiently. Any algorithm running on a suffix tree can also be executed on our compressed suffix trees with a slight slowdown of a factor of polylog(n). 1