Linear models and empirical Bayes methods for assessing differential expression in microarray experiments

Linear models and empirical Bayes methods for assessing differential expression in microarray experiments (2004)

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by Gordon K. Smyth

Venue:	STAT. APPL. GENET. MOL. BIOL
Citations:	201 - 3 self

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@ARTICLE{Smyth04linearmodels,
    author = {Gordon K. Smyth},
    title = {Linear models and empirical Bayes methods for assessing differential expression in microarray experiments},
    journal = {STAT. APPL. GENET. MOL. BIOL},
    year = {2004},
    volume = {3},
    number = {1}
}

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522	Significance analysis of microarrays applied to the ionizing radiation response - Tusher, Tibshirani, et al. - 2001
186	2001 . Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection - Wong
181	Empirical bayes analysis of a microarray experiment - Efron, Tibshirani, et al. - 2001
175	AD: A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes - Baldi, Long
140	Analysis of variance for gene expression microarray data - Kerr, Martin, et al. - 2001
119	On differential variability of expression ratios: improving statistical inference about gene expression changes from microarray data - Newton, Kendziorsky, et al. - 2001
119	GK: Limma: linear models for microarray data. In Bioinformatics and Computational Biology Solutions using R and Bioconductor Edited by - Smyth
100	Summaries of Affymetrix GeneChip probe level data - Irizarry, Bolstad, et al. - 2003
88	Variance stabilization applied to microarray data calibration and to the quantification of differential expression - Huber, Heydebreck, et al. - 2002
81	Speed T: Replicated microarray data - Lönnstedt
68	Assessing gene significance from cDNA microarray expression data via mixed models - Wolfinger, Gibson, et al. - 2001
65	G: Experimental design for gene expression microarrays - Kerr, Churchill
54	Statistical tests for differential expression in cDNA microarray experiments - Cui, Churchill - 2003
43	On parametric empirical Bayes methods for comparing multiple groups using replicated gene expression profiles - Kendziorski, Newton, et al. - 2003
33	Microarray expression profiling identifies genes with altered expression in HDL-deficient mice - Callow, Dudoit, et al. - 2000
32	R (2002) A systematic statistical linear modeling approach to oligonucleotide array experiments - TM, Weir, et al.
31	The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster. Nat Genet 29:389–395 - Jin, RM, et al. - 2001
27	Statistical methods for ranking differentially expressed genes - BROBERG
22	Estimating the proportion of true null hypotheses, with application to DNA microarray data - Langaas, Lindqvist, et al. - 2005
21	The spot user’s guide - Buckley - 2000
21	SL: The Analysis of Gene Expression Data: Methods and Software Springer; 2003. Publish with BioMed Central and every scientist can read your work free of charge "BioMed Central will be the most significant development for disseminating the results of biom - Parmigiani, ES, et al.
16	Statistical issues in microarray data analysis - Smyth, Yang, et al. - 2003
13	Bayesian models for gene expression with DNA microarray data - Ibrahim, Chen, et al. - 2002
12	Bioconductor R Packages for Exploratory Analysis and Normalization of cDNA Microarray Data - Dudoit, Yang
11	T: Normalization of cDNA microarray data. Methods 2003, 31:265-273. Page 11 of 12 (page number not for citation purposes) Genomics 2007 - GK, Speed
10	T: Design and analysis of comparative microarray experiments - YH, Speed
8	Parametric empirical Bayes methods for microarrays. In The Analysis of Gene Expression Data - Newton, Kendziorski
6	empirical Bayes, and microarrays - Efron
4	Microarray analysis of two interacting treatments: a linear model and trends in expression over time - Lönnstedt, Grant, et al. - 2001
3	Bioconductor: a software development project - Gentleman, Bates, et al. - 2003
1	Produced by The Berkeley Electronic Press, 2004 24 Statistical Applications in Genetics and Molecular Biology Vol - Kerr, Churchill - 2001
1	Experimental design for gene expression - Biostatistics - 2000