Algorithm Engineering for Parallel Computation

Algorithm Engineering for Parallel Computation (2002)

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by David A. Bader , Bernard M. E. Moret , Peter Sanders

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@MISC{Bader02algorithmengineering,
    author = {David A. Bader and Bernard M. E. Moret and Peter Sanders},
    title = {Algorithm Engineering for Parallel Computation},
    year = {2002}
}

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7321	Introduction to Algorithms - Cormen, Leiserson, et al. - 2001
1016	A Bridging Model for Parallel Computation - Valiant - 1990
954	Condor - A Hunter of Idle Workstations - LITZKOW, LIVNY - 1988
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651	A high performance, portable implementation of the MPI message passing interface standard - Gropp - 1996
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521	The NAS parallel benchmarks - Bailey, Barszcz, et al. - 1991
494	The input/output complexity of sorting and related problems. Commun - AGGARWAL, VITTER - 1988
471	LogP: towards a realistic model of parallel computation - Culler, Karp, et al. - 1993
409	The SGI Origin: A ccNUMA Highly Scalable Server - Laudon, Lenoski - 1997
397	LAPACK’s user’s guide - ANDERSON, BAI, et al. - 1992
372	FFTW: An adaptive software architecture for the FFT - Frigo, Johnson - 1998
312	Automatically Tuned Linear Algebra Software - Whaley, Dongarra - 1998
306	ScaLAPACK Users' Guide - Blackford - 1997
264	BEOWULF: A parallel workstation for scientific computation - Becker, Sterling, et al. - 1995
226	Algorithms for parallel memory I: Two-level memories - Vitter, Shriver - 1994
204	LogGP: Incorporating long messages into the LogP model for parallel computation - Alexandrov, Ionescu, et al. - 1997
166	A Comparison of Sorting Algorithms for the Connection - Blelloch, Leiserson, et al. - 1991
151	ScaLAPACK: A scalable linear algebra library for distributed memory concurrent computers - Choi, Dongarra, et al. - 1992
139	Synthesis of Parallel Algorithms - Reif - 1993
137	Scalable performance analysis: the Pablo performance analysis environment - Reed, Roth - 1994
120	A probabilistic algorithm for k-SAT and constraint satisfaction problems - Schöning - 1999
80	BSPlib: The BSP programming library - Hill, McColl, et al. - 1998
70	Starfire: extending the SMP envelope - Charlesworth - 1998
67	The network architecture of the Connection Machine CM-5 - Pierre, Wong, et al. - 1992
67	VAMPIR: Visualization and analysis of MPI resources - Nagel, Arnold, et al. - 1996
67	How to Build a Beowulf: A Guide to Implementation and Application of PC Clusters - Sterling, Salmon, et al. - 1999
62	Algorithms for Parallel Memory II: Hierarchical Multilevel Memories - Vitter, Shriver - 1993
52	aJ a. SIMPLE: A Methodology for Programming High Performance Algorithms on Clusters of Symmetric Multiprocessors (SMPs - Bader, J - 1999
45	auf der Heide. Truly efficient parallel algorithms: c-optimal multisearch for an extension of the BSP model - Baumker, Dittrich, et al. - 1995
43	Towards a Theory of Cache-Efficient Algorithms - Sen, Chatterjee, et al.
41	Twelve Ways to Fool the Masses When Giving Performance Results on Parallel Computers”, Supercomputing Review - Bailey - 1991
33	H.A.G.: A quantitative comparison of parallel computation models - Juurlink, Wijshoff - 1998
33	Skampi: A detailed, accurate MPI benchmark - Reussner, Sanders, et al. - 1998
31	C.P.: Submachine locality in the bulk synchronous setting - Torre, Kruskal - 1996
28	Inversion medians outperform breakpoint medians in phylogeny reconstruction from gene-order data - Moret, Siepel, et al. - 2002
26	The Paderborn University BSP (PUB) Library: Design, Implementation and Performance - Bonorden, Juurlink, et al. - 1999
26	Parallel algorithms for personalized communication and sorting with an experimental study - Helman, Bader, et al. - 1996
25	Practical parallel algorithms for dynamic data redistribution, median nding, and selection - Bader, JaJa - 1996
25	Fast parallel sorting under LogP: from theory to practice - CuUer, Dusseau, et al. - 1993
21	Practical parallel algorithms for personalized communication and integer sorting - Bader, Helman, et al. - 1996
21	Parallel Algorithms for Image Histogramming and Connected Components with an Experimental Study - Bader, JaJa - 1995
21	A randomized parallel sorting algorithm with an experimental study - Helman, Bader, et al. - 1998
20	Using PRAM algorithms on a uniform-memoryaccess shared-memory architecture - Bader, Illendula, et al. - 2001
20	A New Deterministic Parallel Sorting Algorithm with an Experimental Evaluation - Helman, JaJa, et al. - 1998
20	Designing practical efficient algorithms for symmetric multiprocessors - JáJá - 1999
19	High-performance algorithm engineering for computational phylogenetics - Moret, Bader, et al.
19	Accessing multiple sequences through set-associative cache. Unpublished manuscript, 2000. Preliminary version - Mehlhorn, Sanders - 1999
17	An experimental analysis of parallel sorting algorithms - Blelloch, Maggs, et al. - 1998
17	Prefix computations on symmetric multiprocessors - Helman, JáJá