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Simple Linear Work Suffix Array Construction (2003) [75 citations — 3 self]

Abstract:

A suffix array represents the suffixes of a string in sorted order. Being a simpler and more compact alternative to suffix trees, it is an important tool for full text indexing and other string processing tasks. We introduce the skew algorithm for suffix array construction over integer alphabets that can be implemented to run in linear time using integer sorting as its only nontrivial subroutine: 1. recursively sort suffixes beginning at positions i mod 3 ≠ 0. 2. sort the remaining suffixes...

Citations

6121 Introduction to Algorithms – Cormen, Leiserson, et al. - 2001
928 A bridging model for parallel computation – Valiant - 1990
539 An Introduction to Parallel Algorithms – JaJa - 1992
449 Suffix arrays: a new method for on-line string searches – Manber, Myers - 1993
429 A space-economical suffix tree construction algorithm – McCreight - 1976
340 A block sorting lossless data compression algorithm – Burrows, Wheeler - 1994
269 Parallel merge sort – Cole - 1988
228 Fast Algorithms for Finding Nearest Common Ancestors – Harel, Tarjan - 1984
227 Algorithms for parallel memory I: two-level memories – Vitter, Shriver - 1994
203 On-line construction of suffix trees – Ukkonen - 1995
99 Optimal suffix tree construction with large alphabets – Farach - 1997
97 The LCA Problem Revisited – Bender, Farach-Colton - 2000
79 The string B-tree: A new data structure for string search in external memory and its applications – Ferragina, Grossi - 1999
78 Algorithms on Strings – Gusfield - 1997
60 Optimal and sublogarithmic time randomized parallel sorting algorithm – Rajasekaran, Reif - 1989
57 Deterministic distribution sort in shared and distributed memory multiprocessors – Nodine, Vitter - 1993
55 A space-economical su#x tree construction algorithm – McCreight - 1976
52 pattern matching algorithms – Linear
51 Communication-efficient parallel sorting – Goodrich - 1996
51 Linear-Time LongestCommon-Prefix Computation in Suffix Arrays and its Applications – Kasai, Lee, et al. - 2001
50 E.: Replacing suffix trees with enhanced suffix arrays – Abouelhoda, Kurtz, et al. - 2004
45 T.: Nearest common ancestors: A survey and a new distributed algorithm – Alstrup, Gavoille, et al. - 2002
44 Space efficient linear time construction of suffix arrays – Ko, Aluru - 2003
38 Linear-time construction of suffix arrays – Kim, Sim, et al. - 2003
35 New indices for text: PAT trees and PAT arrays – Gonnet, Baeza-Yates, et al. - 1992
35 Faster Suffix Sorting – Larsson, Sadakane - 1999
34 The enhanced suffix array and its applications to genome analysis – Abouelhoda, Kurtz, et al. - 2002
34 New indices for text – Gonnet, Baeza-Yates, et al.
33 Optimal Exact String Matching Based on Suffix Arrays – Abouelhoda, Ohlebusch, et al. - 2002
32 Breaking a time-and-space barrier in constructing full-text indexes – Hon, Sadakane, et al.
32 Suffix cactus: a cross between suffix tree and suffix array – Kärkkäinen - 1995
31 On-line construction of su#x trees – Ukkonen - 1995
29 Overcoming the memory bottleneck in suffix tree construction – Farach, Ferragina, et al. - 1998
27 On the sorting-complexity of suffix tree construction – Farach-Colton, Ferragina, et al.
27 Waste makes haste: Tight bounds for loose, parallel sorting – Hagerup, Raman - 1992
24 Fast algorithms for nearest common ancestors – Harel, Tarjan - 1984
23 Suffix trees on words – Andersson, Larsson, et al. - 1996
22 Optimal su#x tree construction with large alphabets – Farach - 1997
20 Greed sort: An optimal sorting algorithm for multiple disks – Nodine, Vitter - 1995
19 Fast lightweight suffix array construction and checking – Burkhardt, Kärkkäinen - 2003
19 Optimal merging and sorting – Hagerup, Rub - 1989
17 A theoretical and experimental study on the construction of suffix arrays in external memory – Crauser, Ferragina
16 Constructing compressed suffix arrays with large alphabets – Hon, Lam, et al. - 2003
15 Optimal logarithmic time randomized suffix tree construction – Farach, Muthukrishnan - 1996
15 Asynchronous parallel disk sorting – Dementiev, Sanders
13 Suffix trees and their applications in string algorithms – Grossi, Italiano - 1993
11 Better external memory suffix array construction – Dementiev, Kärkkäinen, et al. - 2005
10 A Note on Coarse Grained Parallel Integer Sorting – Chan, Dehne - 1999
8 Distributed and paged suffix trees for large genetic databases – Clifford, Sergot
8 Fast BWT in small space by blockwise suffix sorting – Kärkkäinen