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Arb: A software environment for sequence data (2004)
| Venue: | Nucleic Acids Res |
| Citations: | 420 - 10 self |
BibTeX
@ARTICLE{Ludwig04arb:a,
author = {Wolfgang Ludwig and Oliver Strunk and Ralf Westram and Lothar Richter and Harald Meier and Arno Buchner and Tina Lai and Wolfram Foè Rster and Igor Brettske and Stefan Gerber and Anton W. Ginhart and Oliver Gross and Silke Grumann and Stefan Hermann and Ralf Jost and Andreas Koè Nig and Thomas Liss and Ralph Luè Ûmann and Michael May and Bjoè Rn Nonhoff and Boris Reichel and Robert Strehlow and Ros Stamatakis and Norbert Stuckmann and Er Vilbig and Michael Lenke and Thomas Ludwig and Arndt Bode},
title = {Arb: A software environment for sequence data},
journal = {Nucleic Acids Res},
year = {2004},
volume = {32},
pages = {1363--1371}
}
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Abstract
The ARB (from Latin arbor, tree) project was initiated almost 10 years ago. The ARB program package comprises a variety of directly interacting software tools for sequence database maintenance and analysis which are controlled by a common graphical user interface. Although it was initially designed for ribosomal RNA data, it can be used for any nucleic and amino acid sequence data as well. A central database contains processed (aligned) primary structure data. Any additional descriptive data can be stored in database ®elds assigned to the individual sequences or linked via local or worldwide networks. A phylogenetic tree visualized in the main window can be used for data access and visualization. The package comprises additional tools for data import and export, sequence alignment, primary and secondary structure editing, pro-®le and ®lter calculation, phylogenetic analyses, speci®c hybridization probe design and evaluation and other components for data analysis. Currently, the package is used by numerous working groups worldwide.
Keyphrases
sequence data software environment additional descriptive data phylogenetic tree arb program package additional tool sequence alignment worldwide network common graphical user interface lter calculation main window speci hybridization probe design pro le phylogenetic analysis latin arbor data import software tool data analysis secondary structure editing primary structure data ribosomal rna data sequence database maintenance central database contains individual sequence data access database eld amino acid sequence data
