Inferring gene transcriptional modulatory relations: a genetical genomics approach

Inferring gene transcriptional modulatory relations: a genetical genomics approach (2005)

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by Hongqiang Li , Kenneth F. Manly , Elissa J. Chesler , Lei Bao , Jintao Wang , Mi Zhou , Robert W. Williams , Yan Cui

Venue:	Hum. Mol. Genet
Citations:	5 - 0 self

BibTeX

@ARTICLE{Li05inferringgene,
    author = {Hongqiang Li and Kenneth F. Manly and Elissa J. Chesler and Lei Bao and Jintao Wang and Mi Zhou and Robert W. Williams and Yan Cui},
    title = {Inferring gene transcriptional modulatory relations: a genetical genomics approach},
    journal = {Hum. Mol. Genet},
    year = {2005},
    volume = {14},
    number = {9},
    pages = {1119--1125}
}

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Citations

5662	Probabilistic reasoning in intelligent systems: networks of plausible inference - Pearl - 1988
770	Causality: models, reasoning and inference - Pearl - 2000
711	A tutorial on learning with Bayesian networks - Heckerman - 1998
530	D: Using Bayesian networks to analyze expression data - Friedman, Linial, et al.
458	S: KEGG: Kyoto encyclopedia of genes and genomes - Kanehisa, Goto
418	BLAT—the BLAST-like alignment tool - Kent - 2002
361	An algorithm for drawing general undirected graph - Kamada, Kawai - 1989
189	Mrvar A Pajek – Program for Large Network Analysis. Connections 1998, 21:47-57 Publish with BioMed Central and every scientist can read your work free of charge "BioMed Central will be the most significant development for disseminating the results of biom - Batagelj
188	Wingender E: TRANSFAC: transcriptional regulation, from patterns to profiles Nucleic Acids Res 2003 - Matys, Fricke, et al.
172	MIPS: a database for genomes and protein sequences - Mewes, Heumann, et al. - 1999
153	Theory refinement on bayesian networks - Buntine - 1991
144	Inferring cellular networks using probabilistic graphical models - Friedman - 2004
126	Inferring subnetworks from perturbed expression profiles. Bioinformatics 17(suppl 1):S215–S224 - Pe’er, Regev, et al. - 2001
122	NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins - Pruitt, Tatusov, et al. - 2005
120	Learning Bayesian networks is NP-complete - Chickering - 1996
106	Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks - Hartemink, Gifford, et al. - 2001
89	2002 PAJEK—analysis and visualization of large networks - Batagelj, Mrvar
78	Miyano S: Estimation of Genetic Networks and Functional Structures between Genes by using Bayesian Network and Nonparametric Regression - Imoto, Goto
71	Kruglyak L: Genetic dissection of transcriptional regulation in budding yeast - RB, Yvert, et al.
67	Genetic analysis of genome-wide variation in human gene expression. Nature 430: 743–747 - Morley, CM, et al. - 2004
51	MATCH: a tool for searching transcription factor binding sites in DNA sequences - Kel, Gossling, et al. - 2003
45	Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection - Tamada, Kim, et al. - 2003
38	Combining microarrays and biological knowledge for estimating gene networks via bayesian networks - Imoto, Higuchi, et al. - 2004
38	Knott S: A simple regression method for mapping quantitative trait loci in line crosses using flanking markers Heredity - Haley - 1992
30	Genetics of gene expression surveyed in maize, mouse and man - Schadt, Monks, et al. - 2003
27	Uncovering regulatory pathways that affect hematopoietic stem cell function using ‘genetical genomics’. Nat Genet 37 - Bystrykh, Weersing, et al. - 2005
27	Bayesian network and nonparametric heteroscedastic regression for nonlinear modeling of genetic network - Imoto, Kim, et al.
26	Complex trait analysis of gene expression uncovers polygenic and pleiotropic networks that modulate nervous system function - Chesler, Lu, et al.
26	Conzen S: A new dynamic Bayesian network(DBN) approach for identifying gene regulatory networks from time course microarray data - Zou
25	Integrated transcriptional profiling and linkage analysis for identification of genes underlying disease. Nat Genet 37 - Hubner, CA, et al. - 2005
25	Discovery of Causal Relationships in a Gene-regulation Pathway from a Mixture of Experimental and Observational DNA Microarray Data - Yoo, Thorsson, et al. - 2002
20	Constructing Bayesian Network Models of Gene Expression Networks from 14 Data - Spirtes, Glymour, et al. - 2001
17	M: Analyzing cellular biochemistry in terms of molecular networks. Annu Rev Biochem 2004 73:1051-1087 [http:/ /www.ncbi.nlm.nih.gov/entrez/ query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15 189167&query_hl=24]. Publish with BioMed Central and e - Xia, Yu, et al.
16	Genetical genomics: the added value from segregation - Jansen, Nap - 2001
16	R: Genetic correlates of gene expression in recombinant inbred strains: a relational model system to explore neurobehavioral phenotypes - Chesler, Wang, et al.
15	WebQTL: web-based complex trait analysis - Wang, Williams, et al. - 2003
13	An integrative genomics approach to the reconstruction of gene networks in segregating populations. Cytogenet Genome Res 105 - Zhu, PY, et al. - 2004
12	R: A new set of BXD recombinant inbred lines from advanced intercross populations in mice - Peirce, Lu, et al.
10	WebQTL: rapid exploratory analysis of gene expression and genetic networks for brain and behavior - Chesler, Lu, et al. - 2004
8	Burnside J: A strategy to identify positional candidate genes conferring Marek's disease resistance by integrating DNA microarrays and genetic mapping. Anim Genet 2001 - Liu, HH, et al.
8	A statistical problem for inference to regulatory structure from associations of gene expression measurements with microarrays - Chu, Glymour, et al. - 2003
7	Use of recombinant inbred strains to detect quantitative trait loci associated with behavior. Behav Genet - Plomin, McClearn, et al. - 1991
6	Combining mapping and arraying: An approach to candidate gene identification - Wayne, McIntyre - 2002
6	Reverse engineering of genetic networks with Bayesian networks - Husmeier
6	Probabilistic models for identifying regulation networks - Friedman - 2003
6	C: Inferring pathways and networks with a Bayesian framework - Li, Chan
4	Combining mouse congenic strains and microarray gene expression analyses to study a complex trait: The NOD model of Type 1 diabetes - Eaves, Wicker, et al. - 2002
3	The Celera Discovery System - Kerlavage, Bonazzi, et al. - 2002
1	QTL mapping with microarray expression data - Manly, Wang, et al. - 2002
1	Massively parallel complex trait analysis of transcriptional activity in mouse brain - Williams, Manly, et al. - 2002