Learning to extract gene-protein names from weaklylabeled text in preparation

Learning to extract gene-protein names from weaklylabeled text in preparation (2006)

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by Richard C. Wang , Anthony Tomasic , Robert E. Frederking , Isaac Simmons , William W. Cohen , Isaac Simmons , William W. Cohen , Richard C. Wang , Anthony Tomasic , Robert E. Frederking

Venue:	In preparation
Citations:	4 - 2 self

BibTeX

@INPROCEEDINGS{Wang06learningto,
    author = {Richard C. Wang and Anthony Tomasic and Robert E. Frederking and Isaac Simmons and William W. Cohen and Isaac Simmons and William W. Cohen and Richard C. Wang and Anthony Tomasic and Robert E. Frederking},
    title = {Learning to extract gene-protein names from weaklylabeled text in preparation},
    booktitle = {In preparation},
    year = {2006}
}

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Abstract

Training a named entity recognizer (NER) has always been a difficult task due to the effort required to generate a significant amount of annotated training data. In this paper, we reduce or eliminate the effort required to create training data by automatically converting other sources of data into annotated training data. The performance of this approach is tested on a geneprotein name extractor by using the mouse and fly data obtained from the BioCreAtIvE challenge. Results show that our methods are effective and that our trained NER system outperforms all of our baseline results. 1

Citations

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