An MML Classification of Protein Structure that knows about Angles and Sequence

An MML Classification of Protein Structure that knows about Angles and Sequence

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by T. Edgoose , L. Allison , D. L. Dowe

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@MISC{Edgoose_anmml,
    author = {T. Edgoose and L. Allison and D. L. Dowe},
    title = {An MML Classification of Protein Structure that knows about Angles and Sequence},
    year = {}
}

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Abstract

this paper we apply a Hidden Markov Model to model the structure of a collection of known proteins. This Markov classi#cation is able to take advantage of information implicit in the order of a sequence of observations and hence is better suited to modelling protein data than a classi#cation model that assumes independence between observations. We use an Minimum Message Length #MML# information measure to evaluate our protein structure model which enables us to #nd the model best supported by the known evidence

Citations

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