Hidden Markov models in computational biology: applications to protein modeling (1994)

by Anders Krogh , Michael Brown , I. Saira Mian , Kimmen Sjölander , David Haussler
Venue:JOURNAL OF MOLECULAR BIOLOGY
Citations:436 - 29 self

Documents Related by Co-Citation

128 Hidden Markov models of biological primary sequence information – P Baldi, Y Chauvin, T Hunkapiller, M McClure - 1994
1891 Gapped Blast and PsiBlast: a new generation of protein database search programs – Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, David J. Lipman - 1997
110 Multiple alignment using hidden markov models – S R Eddy - 1995
1924 Basic local alignment search tool – S F Altschul, W Gish, W Miller, E W Myers, D J Lipman - 1990
201 Profile analysis: detection of distantly related proteins – M Gribskov, A D McLachlan, D Eisenberg - 1987
63 Maximum discrimination hidden Markov models of sequence consensus – S R Eddy, G Mitchison, R Durbin - 1995
703 SCOP, Structural Classification of Proteins Database: Applications to Evaluation of the Effectiveness of Sequence Alignment Methods and Statistics of Protein Structural Data – Tim J. P. Hubbard, Bart Ailey, Steven E. Brenner, Alexey G. Murzin , Cyrus Chothia - 1998
509 Henikoff J: Amino acid substitution matrices from protein blocks – S Henikoff - 1992
667 An introduction to hidden Markov models – L. R. Rabiner, B. H. Juang - 1986
593 Improved tools for biological sequence comparison – W R Pearson, D J Lipman - 1988
131 Hidden Markov models for sequence analysis: extension and analysis of the basic method – Richard Hughey, Anders Krogh - 1996
163 A Discriminative Framework for Detecting Remote Protein Homologies – Tommi Jaakkola , Mark Diekhans, David Haussler - 1999
46 Predicting protein structure using hidden Markov models – Kevin Karplus , Kimmen Sjölander , Christian Barrett , Melissa Cline , David Haussler , Richard Hughey , Liisa Holm , Chris Sander - 1997
46 Local alignment statistics,” Methods in enzymology – S Altschul, W Gish - 1996
146 Sequence Comparisons Using Multiple Sequences Detect Three Times as Many Remote . . . – Jong Park, Kevin Karplus, Christian Barrett, Richard Hughey, David Haussler, Tim Hubbard, Cyrus Chothia - 1998
517 SR: Profile hidden Markov models – Eddy - 1998
3117 A tutorial on hidden markov models and selected applications in speech recognition – Lawrence R. Rabiner - 1989
32 Identification of protein sequence homology by consensus template alignment – W R Taylor - 1986
6234 Maximum likelihood from incomplete data via the EM algorithm – A. P. Dempster, N. M. Laird, D. B. Rubin - 1977