Programmability of Chemical Reaction Networks

by Matthew Cook , David Soloveichik , Erik Winfree , Jehoshua Bruck
Citations:8 - 2 self

Active Bibliography

19 Computation with finite stochastic chemical reaction networks – David Soloveichik, Matthew Cook, Erik Winfree, Jehoshua Bruck - 2008
5 Networks of Relations – Matthew Cook, Matthew Cook - 2005
By – Nicolae Radu Zabet
By – Nicolae Radu Zabet
6 Toward Computational Systems Biology – Lingchong You - 2004
14 Incorporating diffusion in complex geometries into stochastic chemical kinetics simulations – Samuel A. Isaacson, Charles, S. Peskin
1 Exact Stochastic Simulation of Chemical Reactions with Cycle Leaping – Marc D. Riedel, Jehoshua Bruck
Date – Hiroyuki Kuwahara, Hiroyuki Kuwahara, Chris J. Myers, James Keener, Gary Lindstrom, Michael Samoilov, Chris J. Myers, David S. Chapman - 2007
Crossing the Mesoscale No-Man’s Land via Parallel Kinetic Monte Carlo – Steve Plimpton, Corbett Battaile, Mike Ch, Liz Holm, Aidan Thompson, Veena Tikare, Greg Wagner, Xiaowang Zhou, Cristina Garcia Cardona, Alex Slepoy - 2009
3 Robust Stochastic Chemical Reaction Networks and Bounded Tau-Leaping – David Soloveichik - 803
18 Analysis of explicit tau-leaping schemes for simulating chemically reacting systems – Tiejun Li
8 Petri Nets for Modelling Metabolic Pathways: A Survey – Paolo Baldan, Nicoletta Cocco, Andrea Marin, Marta Simeoni
Solvability of the halting and reachability problem for binary 2-tag systems – Liesbeth De Mol - 2008
Modelling Gene Regulatory Networks: Systems Biology to Complex Systems – Nicholas Geard - 2004 Quantitative Analysis of Cellular Metabolic Dissipative, Self-Organized Structures – Ildefonso Martínez De La Fuente - 2010
5 The π-Calculus as an Abstraction for Biomolecular Systems – Aviv Regev, Ehud Shapiro
415 Modeling and simulation of genetic regulatory systems: A literature review – Hidde De Jong - 2002
Colored Stochastic Petri Nets for Modeling Complex Biological Systems – Fei Liu, Ming Yang