Hidden Markov models for detecting remote protein homologies (1998)

by Kevin Karplus , Christian Barrett , Richard Hughey
Citations:306 - 12 self

Documents Related by Co-Citation

3822 Gapped Blast and PsiBlast: a new generation of protein database search programs – Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, David J. Lipman - 1997
183 Sequence Comparisons Using Multiple Sequences Detect Three Times as Many Remote . . . – Jong Park, Kevin Karplus, Christian Barrett, Richard Hughey, David Haussler, Tim Hubbard, Cyrus Chothia - 1998
525 Hidden Markov models in computational biology: applications to protein modeling – Anders Krogh, Michael Brown, I. Saira Mian, Kimmen Sjölander, David Haussler - 1994
812 What is a hidden Markov model – S Eddy - 2004
164 Hidden Markov models for sequence analysis: extension and analysis of the basic method – Richard Hughey, Anders Krogh - 1996
643 The Pfam Protein Families Database – Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Kevin L. Howe, Erik L. L. Sonnhammer - 2000
142 Multiple alignment using hidden Markov models – Sean R. Eddy - 1995
380 The protein data bank: A computer-based archive file for macromolecular structures – F C Bernstein, T F Koetzle, G J B Williams, E F Meyer, Rodgers Brice, J R Kennard, O Shimanouchi, T, M Tasami - 1977
31 SCOP: a structural classi®cation of proteins database for the investigation of sequences and structures – A G Murzin, S E Brenner, T Hubbard, C Chothia - 1995
79 Protein fold recognition using sequence-derived predictions – D Fischer, D Eisenberg - 1996
172 Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships – S E Brenner, C Chothia, T J P Hubbard - 1998
963 SCOP, Structural Classification of Proteins Database: Applications to Evaluation of the Effectiveness of Sequence Alignment Methods and Statistics of Protein Structural Data – Tim J. P. Hubbard, Bart Ailey, Steven E. Brenner, Alexey G. Murzin , Cyrus Chothia - 1998
129 Dirichlet Mixtures: A Method for Improving Detection of Weak but Significant Protein Sequence Homology – Kimmen Sjölander, Kevin Karplus, Michael Brown, Richard Hughey, Anders Krogh, I. Saira Mian, David Haussler - 1996
59 Local alignment statistics,” Methods in enzymology – S Altschul, W Gish - 1996
828 Biological sequence analysis: probabilistic models of proteins and nucleic acids. Cambridge Univ – Richard Durbin, Sean Eddy, Anders Krogh, Graeme Mitchison - 1998
108 Assignment of homology to genome sequences using a library of hidden markov models that represent all proteins of known structure – Julian Gough, Kevin Karplus, Richard Hughey, Cyrus Chothia - 2001
102 Comprehensive assessment of automatic structural alignment against a manual standard, the Scop classification of proteins – Mark Gerstein, Michael Levitt - 1998
486 Prediction of Protein Secondary Structure at Better than 70% Accuracy – Burkhard Rost, Chris Sander - 1993
252 Profile analysis: Detection of distantly related proteins – M Gribskov, A D McLachlan, D Eisenberg - 1987