|
79
|
Hmmstr: a hidden markov model for local sequence-structure correlations in proteins
– Christopher Bystroff, Vesteinn Thorsson, David Baker
- 2000
|
|
1891
|
Gapped Blast and PsiBlast: a new generation of protein database search programs
– Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, David J. Lipman
- 1997
|
|
3117
|
A tutorial on hidden markov models and selected applications in speech recognition
– Lawrence R. Rabiner
- 1989
|
|
155
|
C: Enlarged representative set of protein structures. Protein Sci 1994, 3:522-24 [http://bioinfo.tg.fh-gies sen.de/pdbselect/]. Page 11 of 12 (page number not for citation purposes) Bioinformatics 2007
– U Hobohm, Sander
|
|
436
|
Hidden Markov models in computational biology: applications to protein modeling
– Anders Krogh, Michael Brown, I. Saira Mian, Kimmen Sjölander, David Haussler
- 1994
|
|
190
|
Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions
– Kim T. Simons, Charles Kooperberg, Enoch Huang, David Baker
- 1997
|
|
201
|
Profile analysis: detection of distantly related proteins
– M Gribskov, A D McLachlan, D Eisenberg
- 1987
|
|
28
|
D: Global properties of the mapping between local amino acid sequence and local structure in proteins
– Han KF, Baker
- 1996
|
|
509
|
Henikoff J: Amino acid substitution matrices from protein blocks
– S Henikoff
- 1992
|
|
703
|
SCOP, Structural Classification of Proteins Database: Applications to Evaluation of the Effectiveness of Sequence Alignment Methods and Statistics of Protein Structural Data
– Tim J. P. Hubbard, Bart Ailey, Steven E. Brenner, Alexey G. Murzin , Cyrus Chothia
- 1998
|
|
163
|
A Discriminative Framework for Detecting Remote Protein Homologies
– Tommi Jaakkola , Mark Diekhans, David Haussler
- 1999
|
|
137
|
Use of receiver operating characteristic (ROC) analysis to evaluate sequence matching
– Michael Gribskov, Nina L. Robinson
- 1996
|
|
128
|
Hidden Markov models of biological primary sequence information
– P Baldi, Y Chauvin, T Hunkapiller, M McClure
- 1994
|
|
116
|
Combining Pairwise Sequence Similarity and Support Vector Machines for Remote Protein Homology Detection
– Li Liao, William Stafford Noble
- 2002
|
|
41
|
Improving contact predictions by the combination of correlated mutations and other sources of sequence information
– O Olmea, A Valencia
- 1997
|
|
27
|
Casadio R: A neural network based predictor of residue contacts in proteins. Protein Engineering
– P Fariselli
- 1999
|
|
23
|
Y (2002) Fully automated ab initio protein structure prediction using
– C Bystroff, Shao
|
|
18
|
Efficient Remote Homology Detection Using Local Structure
– Yuna Hou, Wynne Hsu, Mong Li Lee, Christopher Bystroff
- 2003
|
|
362
|
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
– I N Shindyalov, P E Bourne
- 1998
|
