Efficiency of database search for identification of mutated and modified proteins via mass spectrometry (2001)

by Pavel A. Pevzner , Zufar Mulyukov , Vlado Dancik , Chris L Tang
Venue:GENOME RES
Citations:13 - 2 self

Documents Related by Co-Citation

31 Mutation-Tolerant Protein Identification by Mass Spectrometry – Pavel A. Pevzner, Vlado Dancík, Chris L. Tang - 2000
124 Probability-based protein identification by searching sequence databases using mass spectrometry data – D N Perkins, D J Pappin, D M Creasy, J S Cottrell - 1999
161 An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database – A L McCormack - 1994
53 De novo peptide sequencing via tandem mass spectrometry – V Dancik, T A Addona, K R Clauser, J E Vath, P A Pevzner
23 Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database. Anal. Chem – J R Yates, J K Eng, A L McCormack, D Schieltz - 1995
56 Error tolerant identification of peptides in sequence databases by peptide sequence tags. Anal Chem 66 – M Mann, M Wilm - 1994
997 A general method applicable to the search for similarities in the amino acid sequence of two proteins – S B Needleman, C D Wunsch - 1970
13 Mining genomes: correlating tandem mass spectra of modified and unmodified peptides to sequences in nucleotide databases – J R Yates - 1995
33 Implementation and uses of automated de novo peptide sequencing by tandem mass spectrometry – J A Taylor, R S Johnson - 2001
79 Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search – A Keller, A I Nesvizhskii, E Kolker, R Aebersold - 2002
33 SCOPE: a probabilistic model for scoring tandem mass spectra against a peptide database – Vineet Bafna, Nathan Edwards - 2001
17 Highthroughput identification of proteins and unanticipated sequence modifications using a mass-based alignment algorithm for MS/MS de novo sequencing results. Anal Chem 76 – Searle BC, S Dasari, M Turner, Reddy AP, D Choi - 2004
17 Identification of post-translational modifications by blind search of mass spectra – D Tsur, S Tanner, E Zandi, V Bafna, P Pevzner - 2005
48 M: Proteomics to study genes and genomes – A Pandey, Mann
29 spectrometry-based proteomics – R Aebersold, M Mann, Mass
27 ON: Proteomic analysis of post-translational modifications – M Mann, Jensen
45 A Dynamic Programming Approach to De Novo Peptide Sequencing via Tandem Mass Spectrometry – Ting Chen, Ming-yang Kao, Matthew Tepel, John Rush, George M. Church - 2001
45 A statistical model for identifying proteins by tandem mass spectrometry – A I Nesvizhskii, A Keller, E Kolker, R Aebersold - 2003
33 AL: Role of accurate mass measurement (+/- 10 ppm) in protein identification strategies employing MS or MS/MS and database searching. Anal Chem – Clauser KR, P Baker, Burlingame - 1999