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31
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Mutation-Tolerant Protein Identification by Mass Spectrometry
– Pavel A. Pevzner, Vlado Dancík, Chris L. Tang
- 2000
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17
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On De Novo Interpretation of Tandem Mass Spectra for Peptide Identification
– Vineet Bafna, Nathan Edwards
- 2003
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Exploiting the kernel trick to . . .
– Yan Fu, et al.
- 2004
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7
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A hidden markov model based scoring function for tandem mass spectrometry
– Yunhu Wan, Austin Yang, Ting Chen
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Both authors contributed equally to this work
– Bo Yan, Chongle Pan, Victor N Olman, Robert L Hettich, Ying Xu
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33
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SCOPE: a probabilistic model for scoring tandem mass spectra against a peptide database
– Vineet Bafna, Nathan Edwards
- 2001
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4
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De novo peptide sequencing and identification with precision mass spectrometry
– Ari M. Frank, Mikhail M. Savitski, Michael L. Nielsen, Roman A. Zubarev, Pavel A. Pevzner
- 2007
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3
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Constrained De Novo Peptide Identification via Multi-objective Optimization
– J.M. Malard, A. Heredia-Langner, D.J. Baxter, K.H. Jarman, W.R. Cannon
- 2004
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Sequence optimization as an alternative . . .
– Alejandro Heredia-Langner , et al.
- 2004
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2
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Getting more from less—algorithms for rapid protein identification with multiple short peptide sequences
– Aaron J. Mackey, Timothy A. J. Haystead, William R. Pearson
- 2002
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2
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Algorithmic complexity of protein identification: Combinatorics of weighted strings
– Mark Cieliebak, Thomas Eriebach, Zsuzsanna Liptak, Jens Stoye, Emo Welzl
- 2004
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14
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SPIDER: Software for Protein identification from Sequence Tags with De Novo Sequencing Error
– Yonghua Han, Bin Ma, Kaizhong Zhang
- 2004
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1
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Comparison of Spectra in Unsequenced Species
– Freddy Cliquet, Guillaume Fertin, Irena Rusu, Dominique Tessier
|
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Proper alignment of MS/MS spectra from unsequenced species
– F. Cliquet, G. Fertin, I. Rusu, D. Tessier
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6
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The Paragon Algorithm, a Next Generation Search Engine That Uses Sequence Temperature Values and Feature Probabilities to Identify Peptides from Tandem Mass Spectra * □S
– Ignat V. Shilov, Sean L. Seymour, Alpesh A. Patel, Alex Loboda, Wilfred H. Tang, Sean P. Keating, Christie L. Hunter, Lydia M. Nuwaysir, Daniel A. Schaeffer
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Spectral Dictionaries FIG. 1. Two approaches to peptide
– unknown authors
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4
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Protein identification by mass spectrometry: issues to be considered
– Michael A. Baldwin
- 2004
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2
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Generating Peptide Candidates from Amino-Acid Sequence Databases for Protein Identification via Mass Spectrometry
– Nathan Edwards, Ross Lippert, Nathan Edwards
- 2002
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5
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Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data: toward more efficient identification of post-translational modifications, sequence polymorphisms, and novel peptides
– Alexey I. Nesvizhskii, Franz F. Roos, Jonas Grossmann, Mathijs Vogelzang, James S. Eddes, Wilhelm Gruissem, Sacha Baginsky, Ruedi Aebersold
- 2006
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