High-Performance Algorithm Engineering for Computational Phylogenetics (2002)

by Bernard M. E. Moret , David A. Bader , Tandy Warnow
Venue:J. Supercomputing
Citations:19 - 6 self

Active Bibliography

25 Industrial Applications of High-Performance Computing for Phylogeny Reconstruction – David A. Bader, Bernard Moret, Lisa Vawter - 2001
47 A New Implementation and Detailed Study of Breakpoint Analysis – Bernard M. E. Moret, Stacia Wyman, David A. Bader, Tandy Warnow, Mi Yan - 2001
Phylogenies from Gene Order Data: A Detailed Study of Breakpoint Analysis – Bernard M. E. Moret, Stacia Wyman, David A. Bader, Tandy Warnow, Mi Yan - 2001
39 Steps Toward Accurate Reconstructions of Phylogenies from Gene-Order Data – Bernard M.E. Moret, Jijun Tang, Li-San Wang, Tandy Warnow - 2002
7 Reconstructing optimal phylogenetic trees: a challenge in experimental algorithmics – Bernard M. E. Moret, Tandy Warnow - 2002
Bioinformatics – Vol No Pages - 2003
28 Inversion medians outperform breakpoint medians in phylogeny reconstruction from gene-order data – Bernard M. E. Moret, Adam C. Siepel, Jijun Tang, Tao Liu - 2002
6 Fast Phylogenetic Methods for the Analysis of Genome Rearrangement Data: An Empirical Study – Li-san Wang, Robert K. Jansen, Bernard M.E. Moret, Bernard M. E, Moret Linda, Linda A. Raubeson, Tandy Warnow - 2002
28 Scaling up accurate phylogenetic reconstruction from gene-order data – Jijun Tang, Bernard M. E. Moret - 2002
99 A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study – David A. Bader, Bernard M. E. Moret, Mi Yan - 2001
Journal Of Computational Biology – Volume Number Mary, M. A. Newton, C. M. Kendziorski, C. S. Richmond, F. R. Blattner - 2001
5 Linear programming for phylogenetic reconstruction based on gene rearrangements – Jijun Tang, Bernard M. E. Moret
15 Phylogenetic reconstruction from gene rearrangement data with unequal gene contents – Jijun Tang, Bernard M. E. Moret - 2003
23 Genomic Distances under Deletions and Insertions – Mark Marron, Krister M. Swenson, Bernard M. E. Moret - 2003
1 Reconstructing chromosomal evolution – Li-san Wang, Tandy Warnow
10 Exact-IEBP: A New Technique For Estimating Evolutionary Distances Between Whole Genomes – Li-san Wang - 2001
8 Algorithms and Experiments: The New (and Old) Methodology – Bernard M. E. Moret, Henry D. Shapiro - 2001
4 Quartet methods for phylogeny reconstruction from gene orders – Tao Liu, Jijun Tang, Bernard M. E. Moret - 2005
1 Quartet-based phylogeny reconstruction from gene orders ⋆ – Tao Liu, Jijun Tang, Bernard M. E. Moret