Gaussian-Weighted RMSD Superposition of Proteins: A Structural Comparison for Flexible Proteins and Predicted Protein Structures (2006)


Download Links

by Kelly L. Damm , Heather A. Carlson
Citations:6 - 0 self

Documents Related by Co-Citation

66 A (2003) Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics 19 Suppl 2 – Y Ye, Godzik
38 Protein domain movements: detection of rigid domains and visualization of hinges in comparisons of atomic coordinates. Proteins 29(1):1 – W Wriggers, K Schulten - 1997
3 M: FlexOracle: predicting flexible hinges by identification of stable domains – S Flores, Gerstein
50 Molmovdb:analysis and visualization of conformational change and structural flexibility – N Echols, D Milburn
3 Venkataraghavan R: New method for rapid characterisation of molecular shapes: applications in drug design – R Nilakantan, N Bauman - 1993
5 Lengauer T: Moment invariants as shape recognition technique for comparing protein binding sites – I Sommer, O Müller, Domingues FS, O Sander, J Weickert
5 Fang Y, Ramani K: Using least median of squares for structural superposition of flexible proteins – Liu YS
11 RJ: An extension of spherical harmonics to region-based rotationally invariant descriptors for molecular shape description and comparison – L Mak, S Grandison, Morris
7 Najmanovich RJ, Kahraman A, Thornton JM. Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons. Bioinformatics 2005;21:2347–2355 – Morris RJ
90 The Protein Threading Problem With Sequence Amino Acid Interaction Preferences Is NP-Complete – Richard H. Lathrop - 1995
13 Analysis of protein loop closure. Two types of hinges produce one motion in lactate dehydrogenase – M Gerstein, C Chothia - 1991
210 A solution for the best rotation to relate two sets of vectors, Acta – W Kabsch - 1976
11 Theseus: Maximum Likelihood Superpositioning and Analysis of Macromolecular Structures – D L Theobald, D S Wuttke
8 Empirical Bayes Hierarchical Models for Regularizing Maximum Likelihood Estimation – D L Theobald, D S Wuttke - 2006
65 Protein Flexibility Prediction Using Graph Theory – Donald J. Jacobs , et al. - 2001
10 Shape signatures: a new approach to computer-aided ligand- and receptor-based drug design – Y J. Zauhar, Guillermo Moyna, Lifeng Tian, Zhijian Li, William J. Welsh
3 Axenopoulos A, Tzovaras D, Strintzis M: Three-dimensional shape-structure comparison method for protein classification – P Daras, D Zarpalas
2 ID: A fast and efficient method for 2D and 3D molecular shape description – Bemis GW, Kuntz - 1992
3 Vakser IA: A simple shape characteristic of protein-protein recognition – G Nicola