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73
Optimal Structure Identification with Greedy Search
, 2002
"... In this paper we prove the socalled "Meek Conjecture". In particular, we show that if a is an independence map of another DAG then there exists a finite sequence of edge additions and covered edge reversals in such that (1) after each edge modification and (2) after all modifications ..."
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Cited by 159 (1 self)
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In this paper we prove the socalled "Meek Conjecture". In particular, we show that if a is an independence map of another DAG then there exists a finite sequence of edge additions and covered edge reversals in such that (1) after each edge modification and (2) after all modifications H.
Sparse graphical models for exploring gene expression data
 Journal of Multivariate Analysis
, 2004
"... DMS0112069. Any opinions, findings, and conclusions or recommendations expressed in this material are ..."
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Cited by 131 (22 self)
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DMS0112069. Any opinions, findings, and conclusions or recommendations expressed in this material are
ANCESTRAL GRAPH MARKOV MODELS
, 2002
"... This paper introduces a class of graphical independence models that is closed under marginalization and conditioning but that contains all DAG independence models. This class of graphs, called maximal ancestral graphs, has two attractive features: there is at most one edge between each pair of verti ..."
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Cited by 74 (17 self)
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This paper introduces a class of graphical independence models that is closed under marginalization and conditioning but that contains all DAG independence models. This class of graphs, called maximal ancestral graphs, has two attractive features: there is at most one edge between each pair of vertices; every missing edge corresponds to an independence relation. These features lead to a simple parameterization of the corresponding set of distributions in the Gaussian case.
An Alternative Markov Property for Chain Graphs
 Scand. J. Statist
, 1996
"... Graphical Markov models use graphs, either undirected, directed, or mixed, to represent possible dependences among statistical variables. Applications of undirected graphs (UDGs) include models for spatial dependence and image analysis, while acyclic directed graphs (ADGs), which are especially conv ..."
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Cited by 47 (4 self)
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Graphical Markov models use graphs, either undirected, directed, or mixed, to represent possible dependences among statistical variables. Applications of undirected graphs (UDGs) include models for spatial dependence and image analysis, while acyclic directed graphs (ADGs), which are especially convenient for statistical analysis, arise in such fields as genetics and psychometrics and as models for expert systems and Bayesian belief networks. Lauritzen, Wermuth, and Frydenberg (LWF) introduced a Markov property for chain graphs, which are mixed graphs that can be used to represent simultaneously both causal and associative dependencies and which include both UDGs and ADGs as special cases. In this paper an alternative Markov property (AMP) for chain graphs is introduced, which in some ways is a more direct extension of the ADG Markov property than is the LWF property for chain graph. 1 INTRODUCTION Graphical Markov models use graphs, either undirected, directed, or mixed, to represent...
Chain Graph Models and their Causal Interpretations
 B
, 2001
"... Chain graphs are a natural generalization of directed acyclic graphs (DAGs) and undirected graphs. However, the apparent simplicity of chain graphs belies the subtlety of the conditional independence hypotheses that they represent. There are a number of simple and apparently plausible, but ultim ..."
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Cited by 46 (4 self)
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Chain graphs are a natural generalization of directed acyclic graphs (DAGs) and undirected graphs. However, the apparent simplicity of chain graphs belies the subtlety of the conditional independence hypotheses that they represent. There are a number of simple and apparently plausible, but ultimately fallacious interpretations of chain graphs that are often invoked, implicitly or explicitly. These interpretations also lead to awed methods for applying background knowledge to model selection. We present a valid interpretation by showing how the distribution corresponding to a chain graph may be generated as the equilibrium distribution of dynamic models with feedback. These dynamic interpretations lead to a simple theory of intervention, extending the theory developed for DAGs. Finally, we contrast chain graph models under this interpretation with simultaneous equation models which have traditionally been used to model feedback in econometrics. Keywords: Causal model; cha...
Bayesian Model Averaging And Model Selection For Markov Equivalence Classes Of Acyclic Digraphs
 Communications in Statistics: Theory and Methods
, 1996
"... Acyclic digraphs (ADGs) are widely used to describe dependences among variables in multivariate distributions. In particular, the likelihood functions of ADG models admit convenient recursive factorizations that often allow explicit maximum likelihood estimates and that are well suited to building B ..."
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Cited by 38 (5 self)
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Acyclic digraphs (ADGs) are widely used to describe dependences among variables in multivariate distributions. In particular, the likelihood functions of ADG models admit convenient recursive factorizations that often allow explicit maximum likelihood estimates and that are well suited to building Bayesian networks for expert systems. There may, however, be many ADGs that determine the same dependence (= Markov) model. Thus, the family of all ADGs with a given set of vertices is naturally partitioned into Markovequivalence classes, each class being associated with a unique statistical model. Statistical procedures, such as model selection or model averaging, that fail to take into account these equivalence classes, may incur substantial computational or other inefficiencies. Recent results have shown that each Markovequivalence class is uniquely determined by a single chain graph, the essential graph, that is itself Markovequivalent simultaneously to all ADGs in the equivalence clas...
Improved learning of Bayesian networks
 Proc. of the Conf. on Uncertainty in Artificial Intelligence
, 2001
"... Two or more Bayesian network structures are Markov equivalent when the corresponding acyclic digraphs encode the same set of conditional independencies. Therefore, the search space of Bayesian network structures may be organized in equivalence classes, where each of them represents a different set o ..."
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Cited by 37 (6 self)
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Two or more Bayesian network structures are Markov equivalent when the corresponding acyclic digraphs encode the same set of conditional independencies. Therefore, the search space of Bayesian network structures may be organized in equivalence classes, where each of them represents a different set of conditional independencies. The collection of sets of conditional independencies obeys a partial order, the socalled “inclusion order.” This paper discusses in depth the role that the inclusion order plays in learning the structure of Bayesian networks. In particular, this role involves the way a learning algorithm traverses the search space. We introduce a condition for traversal operators, the inclusion boundary condition, which, when it is satisfied, guarantees that the search strategy can avoid local maxima. This is proved under the assumptions that the data is sampled from a probability distribution which is faithful to an acyclic digraph, and the length of the sample is unbounded. The previous discussion leads to the design of a new traversal operator and two new learning algorithms in the context of heuristic search and the Markov Chain Monte Carlo method. We carry out a set of experiments with synthetic and realworld data that show empirically the benefit of striving for the inclusion order when learning Bayesian networks from data.
A Hybrid Anytime Algorithm for the Construction of Causal Models From Sparse Data
 PROCEEDINGS OF THE FIFTEENTH INTERNATIONAL CONFERENCE ON UNCERTAINTY IN ARTIFICIAL INTELLIGENCE
, 1999
"... We present a hybrid constraintbased/Bayesian algorithm for learning causal networks in the presence of sparse data. The algorithm searches the space of equivalence classes of models (essential graphs) using a heuristic based on conventional constraintbased techniques. Each essential graph is ..."
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Cited by 29 (3 self)
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We present a hybrid constraintbased/Bayesian algorithm for learning causal networks in the presence of sparse data. The algorithm searches the space of equivalence classes of models (essential graphs) using a heuristic based on conventional constraintbased techniques. Each essential graph is then converted into a directed acyclic graph and scored using a Bayesian scoring metric. Two variants
Using Path Diagrams as a Structural Equation Modelling Tool
, 1997
"... this paper, we will show how path diagrams can be used to solve a number of important problems in structural equation modelling. There are a number of problems associated with structural equation modeling. These problems include: ..."
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Cited by 28 (7 self)
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this paper, we will show how path diagrams can be used to solve a number of important problems in structural equation modelling. There are a number of problems associated with structural equation modeling. These problems include:
On Chain Graph Models For Description Of Conditional Independence Structures
 Ann. Statist
, 1998
"... This paper deals with chain graphs (CGs) which allow both directed and undirected edges. This class of graphs, introduced by Lauritzen and Wermuth [15], generalizes both UGs and DAGs. To establish the semantics of CGs one should associate an independency model to every CG. Some steps were already ma ..."
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Cited by 19 (3 self)
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This paper deals with chain graphs (CGs) which allow both directed and undirected edges. This class of graphs, introduced by Lauritzen and Wermuth [15], generalizes both UGs and DAGs. To establish the semantics of CGs one should associate an independency model to every CG. Some steps were already made. Lauritzen and Wermuth [16] intended to use CGs to describe independency models for strictly positive probability distributions and introduced the concept of the chain Markov property which is analogous to the concept of causal input list for DAGs. Lauritzen and Frydenberg [17, 9] generalized the concept of moral graph and introduced a moralization criterion for reading independency statements from a CG. Frydenberg [9] characterized CGs with the same Markov ON CHAIN GRAPH MODELS 3 property (that is producing the same CGmodel) and Andersson, Madigan and Perlman [3] used special CGs to represent uniquely classes of Markov equivalent DAGs. Whittaker [31] in his book gave several examples of the use of CGs, and other recent works also deal with them [6, 20, 23, 30], the most comprehensive account is provided by the book [19]. Several results proved here were already presented (without proof) in our previous conference contribution [5]. An alternative approach to the generalization of UGs and DAGs was started by Cox and Wermuth [7] who introduced a wider class of jointresponse chain graphs which allow also 'dashed' directed and undirected edges in addition to the classic 'solid' directed and undirected edges treated in this paper. Andersson, Madigan and Perlman [1] introduced an alternative Markov property to give an interpretation to those jointresponse CGs which combine dashed directed edges with solid undirected edges (of course, another independency model is associated...