In the feature subset selection problem, a learning algorithm is faced with the problem of selecting a relevant subset of features upon which to focus its attention, while ignoring the rest. To achieve the best possible performance with a particular learning algorithm on a particular training set, a feature subset selection method should consider how the algorithm and the training set interact. We explore the relation between optimal feature subset selection and relevance. Our wrapper method searches for an optimal feature subset tailored to a particular algorithm and a domain. We study the strengths and weaknesses of the wrapper approach and show a series of improved designs. We compare the wrapper approach to induction without feature subset selection and to Relief, a filter approach to feature subset selection. Significant improvement in accuracy is achieved for some datasets for the two families of induction algorithms used: decision trees and

Recent work in supervised learning has shown that a surprisingly simple Bayesian classifier with strong assumptions of independence among features, called naive Bayes, is competitive with state-of-the-art classifiers such as C4.5. This fact raises the question of whether a classifier with less restrictive assumptions can perform even better. In this paper we evaluate approaches for inducing classifiers from data, based on the theory of learning Bayesian networks. These networks are factored representations of probability distributions that generalize the naive Bayesian classifier and explicitly represent statements about independence. Among these approaches we single out a method we call Tree Augmented Naive Bayes (TAN), which outperforms naive Bayes, yet at the same time maintains the computational simplicity (no search involved) and robustness that characterize naive Bayes. We experimentally tested these approaches, using problems from the University of California at Irvine repository, and compared them to C4.5, naive Bayes, and wrapper methods for feature selection.

Methods for voting classification algorithms, such as Bagging and AdaBoost, have been shown to be very successful in improving the accuracy of certain classifiers for artificial and real-world datasets. We review these algorithms and describe a large empirical study comparing several variants in conjunction with a decision tree inducer (three variants) and a Naive-Bayes inducer. The purpose of the study is to improve our understanding of why and when these algorithms, which use perturbation, reweighting, and combination techniques, affect classification error. We provide a bias and variance decomposition of the error to show how different methods and variants influence these two terms. This allowed us to determine that Bagging reduced variance of unstable methods, while boosting methods (AdaBoost and Arc-x4) reduced both the bias and variance of unstable methods but increased the variance for Naive-Bayes, which was very stable. We observed that Arc-x4 behaves differently than AdaBoost if reweighting is used instead of resampling, indicating a fundamental difference. Voting variants, some of which are introduced in this paper, include: pruning versus no pruning, use of probabilistic estimates, weight perturbations (Wagging), and backfitting of data. We found that Bagging improves when probabilistic estimates in conjunction with no-pruning are used, as well as when the data was backfit. We measure tree sizes and show an interesting positive correlation between the increase in the average tree size in AdaBoost trials and its success in reducing the error. We compare the mean-squared error of voting methods to non-voting methods and show that the voting methods lead to large and significant reductions in the mean-squared errors. Practical problems that arise in implementing boosting algorithms are explored, including numerical instabilities and underflows. We use scatterplots that graphically show how AdaBoost reweights instances, emphasizing not only "hard" areas but also outliers and noise.

Many supervised machine learning algorithms require a discrete feature space. In this paper, we review previous work on continuous feature discretization, identify defining characteristics of the methods, and conduct an empirical evaluation of several methods. We compare binning, an unsupervised discretization method, to entropy-based and purity-based methods, which are supervised algorithms. We found that the performance of the Naive-Bayes algorithm significantly improved when features were discretized using an entropy-based method. In fact, over the 16 tested datasets, the discretized version of Naive-Bayes slightly outperformed C4.5 on average. We also show that in some cases, the performance of the C4.5 induction algorithm significantly improved if features were discretized in advance; in our experiments, the performance never significantly degraded, an interesting phenomenon considering the fact that C4.5 is capable of locally discretizing features.

We analyze critically the use of classification accuracy to compare classifiers on natural data sets, providing a thorough investigation using ROC analysis, standard machine learning algorithms, and standard benchmark data sets. The results raise serious concerns about the use of accuracy for comparing classifiers and drawinto question the conclusions that can be drawn from such studies. In the course of the presentation, we describe and demonstrate what we believe to be the proper use of ROC analysis for comparative studies in machine learning research. We argue that this methodology is preferable both for making practical choices and for drawing scientific conclusions.

In real-world environments it is usually difficult to specify target operating conditions precisely. This uncertainty makes building robust classification systems problematic. We present a method for the comparison of classifier performance that is robust to imprecise class distributions and misclassification costs. The ROC convex hull method combines techniques from ROC analysis, decision analysis and computational geometry, and adapts them to the particulars of analyzing learned classifiers. The method is efficient and incremental, minimizes the management of classifier performance data, and allows for clear visual comparisons and sensitivity analyses. We then show that it is possible to build a hybrid classifier that will perform at least as well as the best available classifier for any target conditions. This robust performance extends across a wide variety of comparison frameworks, including the optimization of metrics such as accuracy, expected cost, lift, precision, recall, and ...

This literature review discusses different methods under the general rubric of learning Bayesian networks from data, and includes some overlapping work on more general probabilistic networks. Connections are drawn between the statistical, neural network, and uncertainty communities, and between the different methodological communities, such as Bayesian, description length, and classical statistics. Basic concepts for learning and Bayesian networks are introduced and methods are then reviewed. Methods are discussed for learning parameters of a probabilistic network, for learning the structure, and for learning hidden variables. The presentation avoids formal definitions and theorems, as these are plentiful in the literature, and instead illustrates key concepts with simplified examples. Keywords--- Bayesian networks, graphical models, hidden variables, learning, learning structure, probabilistic networks, knowledge discovery. I. Introduction Probabilistic networks or probabilistic gra...

Constantly improving gene expression profiling technologies are expected to provide understanding and insight into cancer related cellular processes. Gene expression data is also expected to significantly aid in the development of efficient cancer diagnosis and classification platforms. In this work we examine two sets of gene expression data measured across sets of tumor and normal clinical samples. One set consists of 2,000 genes, measured in 62 epithelial colon samples [1]. The second consists of 100,000 clones, measured in 32 ovarian samples (unpublished, extension of data set described in [26]). We examine the use of scoring methods, measuring separation of tumors from normals using individual gene expression levels. These are then coupled with high dimensional classification methods to assess the classification power of complete expression profiles. We present results of performing leave-one-out cross validation (LOOCV) experiments on the two data sets, employing SVM [8], AdaB...

Decision trees have proved to be valuable tools for the description, classification and generalization of data. Work on constructing decision trees from data exists in multiple disciplines such as statistics, pattern recognition, decision theory, signal processing, machine learning and artificial neural networks. Researchers in these disciplines, sometimes working on quite different problems, identified similar issues and heuristics for decision tree construction. This paper surveys existing work on decision tree construction, attempting to identify the important issues involved, directions the work has taken and the current state of the art. Keywords: classification, tree-structured classifiers, data compaction 1. Introduction Advances in data collection methods, storage and processing technology are providing a unique challenge and opportunity for automated data exploration techniques. Enormous amounts of data are being collected daily from major scientific projects e.g., Human Genome...

We define and describe the related problems of new event detection and event tracking within a stream of broadcast news stories. We focus on a strict on-line setting-i.e., the system must make decisions about one story before looking at any subsequent stories. Our approach to detection uses a single pass clustering algorithm and a novel thresholding model that incorporates the properties of events as a major component. Our ap-proach to tracking is similar to typical information filtering methods. We discuss the value of “surprising” features that have unusual occurrence characteristics, and briefly explore on-line adaptive filtering to handle evolving events in the news. New event detection and event tracking are part of the Topic Detection and Tracking (TDT) initiative.