This paper reports the application of new methods for detecting computation in nonlinear processes to a simple evolutionary model that allows us to directly address these questions. The main result is the evolutionary discovery of methods for emergent global computation in a spatially distributed system consisting of locally interacting processors. We use the general term "emergent computation" to describe the appearance of global information-processing in such systems (cf. (6,7)). Our goal is to understand the mechanisms by which evolution can discover methods of emergent computation. We are studying this question in a theoretical framework that, while simplified, still captures the essence of the phenomena of interest. This framework requires (i) an idealized class of decentralized system in which global information-processing can arise from the actions of simple, locally-connected units; (ii) a computational task that necessitates global information processing; and (iii) an idealized computational model of evolution. One of the simplest systems in which emergent computation can be studied is a onedimensional binary-state cellular automaton (CA) (8) --- a one-dimensional spatial lattice of

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s: Jan. 1992 -- Dec. 1994 ffl CTI: Current Technology Index Jan./Feb. 1993 -- Jan./Feb. 1994 ffl DAI: Dissertation Abstracts International: Vol. 53 No. 1 -- Vol. 55 No. 4 (1994) ffl EEA: Electrical & Electronics Abstracts: Jan. 1991 -- Dec. 1994 ffl P: Index to Scientific & Technical Proceedings: Jan. 1986 -- Feb. 1995 (except Nov. 1994) ffl EI A: The Engineering Index Annual: 1987 -- 1992 ffl EI M: The Engineering Index Monthly: Jan. 1993 -- Dec. 1994 The following GA researchers have already kindly supplied their complete autobibliographies and/or proofread references to their papers: Dan Adler, Patrick Argos, Jarmo T. Alander, James E. Baker, Wolfgang Banzhaf, Ralf Bruns, I. L. Bukatova, Thomas Back, Yuval Davidor, Dipankar Dasgupta, Marco Dorigo, Bogdan Filipic, Terence C. Fogarty, David B. Fogel, Toshio Fukuda, Hugo de Garis, Robert C. Glen, David E. Goldberg, Martina Gorges-Schleuter, Jeffrey Horn, Aristides T. Hatjimihail, Mark J. Jakiela, Richard S. Judson, Akihiko Konaga...

Evolvable hardware (EHW) has attracted increasing attention since early 1990's with the advent of easily reconfigurable hardware such as field programmable gate arrays (FPGAs). It promises to provide an entirely new approach to complex electronic circuit design and new adaptive hardware. EHW has been demonstrated to be able to perform a wide range of tasks from pattern recognition to adaptive control. However, there are still many fundamental issues in EHW which remain open. This paper reviews the current status of EHW, discusses the promises and possible advantages of EHW, and indicates the challenges we must meet in order to develop practical and large-scale EHW. 1 Introduction Evolvable hardware (EHW) refers to hardware that can change its architecture and behaviour dynamically and autonomously by interacting with its environment. At present, almost all EHW uses an evolutionary algorithm (EA) as their main adaptive mechanism. One of the key motivations behind EHW is to learn from N...

Abstract. How does evolution produce sophisticated emergent computation in systems composed of simple components limited to local interactions? To model such a process, we used a genetic algorithm (GA) to evolve cellular automata to perform a computational task requiring globally-coordinated information processing. On most runs a class of relatively unsophisticated strategies was evolved, but on a subset of runs a number of quite sophisticated strategies was discovered. We analyze the emergent logic underlying these strategies in terms of information processing performed by “particles ” in space-time, and we describe in detail the generational progression of the GA evolution of these strategies. Our analysis is a preliminary step in understanding the general mechanisms by which sophisticated emergent computational capabilities can be automatically produced in decentralized multiprocessor systems. 1.

Metastability is a common phenomenon. Many evolutionary processes, both natural and artificial, alternate between periods of stasis and brief periods of rapid change in their behavior. In this paper an analytical model for the dynamics of a mutationonly genetic algorithm (GA) is introduced that identifies a new and general mechanism causing metastability in evolutionary dynamics. The GA’s population dynamics is described in terms of flows in the space of fitness distributions. The trajectories through fitness distribution space are derived in closed form in the limit of infinite populations. We then show how finite populations induce metastability, even in regions where fitness does not exhibit a local optimum. In particular, the model predicts the occurrence of “fitness epochs”—periods of stasis in population fitness distributions—at finite population size and identifies the locations of these fitness epochs with the flow’s hyperbolic fixed points. This enables exact predictions of the metastable fitness distributions during the fitness epochs, as well as giving insight into the nature of the periods of stasis and the innovations between them. All these results are obtained as closed-form expressions in terms of the GA’s parameters.

Coevolution provides a framework to implement search heuristics that are more elaborate than those driving the exploration of the state space in canonical evolutionary systems. However, some drawbacks have also to be overcome in order to ensure continuous progress on the long term. This paper presents the concept of coevolutionary learning and introduces a search procedure which successfully addresses the underlying impediments in coevolutionary search. The application of this algorithm to the discovery of cellular automata rules for a classification task is described. This work resulted in a significant improvement over previously known best rules for this task. 1 Introduction Some problems are difficult because solutions have to be evaluated against a very large number of test cases in order to determine their score accurately. The discovery of game strategies and learning control procedures for autonomous agents are a few examples of such problems. To make learning tractable, solu...

Mathematical and computational modeling of genetic regulatory networks promises to uncover the fundamental principles governing biological systems in an integrarive and holistic manner. It also paves the way toward the development of systematic approaches for effective therapeutic intervention in disease. The central theme in this paper is the Boolean formalism as a building block for modeling complex, large-scale, and dynamical networks of genetic interactions. We discuss the goals of modeling genetic networks as well as the data requirements. The Boolean formalism is justified from several points of view. We then introduce Boolean networks and discuss their relationships to nonlinear digital filters. The role of Boolean networks in understanding cell differentiation and cellular functional states is discussed. The inference of Boolean networks from real gene expression data is considered from the viewpoints of computational learning theory and nonlinear signal processing, touching on computational complexity of learning and robustness. Then, a discussion of the need to handle uncertainty in a probabilistic framework is presented, leading to an introduction of probabilistic Boolean networks and their relationships to Markov chains. Methods for quantifying the influence of genes on other genes are presented. The general question of the potential effect of individual genes on the global dynamical network behavior is considered using stochastic perturbation analysis. This discussion then leads into the problem of target identification for therapeutic intervention via the development of several computational tools based on first-passage times in Markov chains. Examples from biology are presented throughout the paper. 1

We review recent work done by our group on applying genetic algorithms (GAs) to the design of cellular automata (CAs) that can perform computations requiring global coordination. A GA was used to evolve CAs for two computational tasks: density classification and synchronization. In both cases, the GA discovered rules that gave rise to sophisticated emergent computational strategies. These strategies can be analyzed using a “computational mechanics ” framework in which “particles ” carry information and interactions between particles effects information processing. This framework can also be used to explain the process by which the strategies were designed by the GA. The work described here is a first step in employing GAs to engineer useful emergent computation in decentralized multi-processor systems. It is also a first step in understanding how an evolutionary process can produce complex systems with sophisticated collective computational abilities.

Genetic algorithms are computational models of evolution that play a central role in many artificial-life models. We review the history and current scope of research on genetic algorithms in artificial life, using illustrative examples in which the genetic algorithm is used to study how learning and evolution interact, and to model ecosystems, immune system, cognitive systems, and social systems. We also outline a number of open questions and future directions for genetic algorithms in artificial-life research.