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The Knowledge-Gradient Algorithm for Sequencing Experiments in Drug Discovery
- INFORMS J. on Computing
, 2010
"... We present a new technique for adaptively choosing the sequence of molecular compounds to test in drug discovery. Beginning with a base compound, we consider the problem of searching for a chemical derivative of the molecule that best treats a given disease. The problem of choosing molecules to test ..."
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Cited by 3 (3 self)
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We present a new technique for adaptively choosing the sequence of molecular compounds to test in drug discovery. Beginning with a base compound, we consider the problem of searching for a chemical derivative of the molecule that best treats a given disease. The problem of choosing molecules to test to maximize the expected quality of the best compound discovered may be formulated mathematically as a ranking-andselection problem in which each molecule is an alternative. We apply a recently developed algorithm, known as the knowledge-gradient algorithm, that uses correlations in our Bayesian prior distribution between the performance of different alternatives (molecules) to dramatically reduce the number of molecular tests required, but it has heavy computational requirements that limit the number of possible alternatives to a few thousand. We develop computational improvements that allow the knowledge-gradient method to consider much larger sets of alternatives, and we demonstrate the method on a problem with 87,120 alternatives.
Information collection on a graph
, 2010
"... We derive a knowledge gradient policy for an optimal learning problem on a graph, in which we use sequential measurements to refine Bayesian estimates of individual edge values in order to learn about the best path. This problem differs from traditional ranking and selection, in that the implementat ..."
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Cited by 2 (2 self)
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We derive a knowledge gradient policy for an optimal learning problem on a graph, in which we use sequential measurements to refine Bayesian estimates of individual edge values in order to learn about the best path. This problem differs from traditional ranking and selection, in that the implementation decision (the path we choose) is distinct from the measurement decision (the edge we measure). Our decision rule is easy to compute, and performs competitively against other learning policies, including a Monte Carlo adaptation of the knowledge gradient policy for ranking and selection. 1
Hierarchical Knowledge Gradient for Sequential Sampling
"... We propose a sequential sampling policy for noisy discrete global optimization and ranking and selection, in which we aim to efficiently explore a finite set of alternatives before selecting an alternative as best when exploration stops. Each alternative may be characterized by a multidimensional ve ..."
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Cited by 2 (2 self)
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We propose a sequential sampling policy for noisy discrete global optimization and ranking and selection, in which we aim to efficiently explore a finite set of alternatives before selecting an alternative as best when exploration stops. Each alternative may be characterized by a multidimensional vector of categorical and numerical attributes and has independent normal rewards. We use a Bayesian probability model for the unknown reward of each alternative and follow a fully sequential sampling policy called the knowledge-gradient policy. This policy myopically optimizes the expected increment in the value of sampling information in each time period. We propose a hierarchical aggregation technique that uses the common features shared by alternatives to learn about many alternatives from even a single measurement. This approach greatly reduces the measurement effort required, but it requires some prior knowledge on the smoothness of the function in the form of an aggregation function and computational issues limit the number of alternatives that can be easily considered to the thousands. We prove that our policy is consistent, finding a globally optimal alternative when given enough measurements, and show through simulations that it performs competitively with or significantly better than other policies.
Bayesian Active Learning With Basis Functions
- in ‘Proceedings of the 2011 IEEE Symposium on Adaptive Dynamic Programming and Reinforcement Learning
, 2011
"... Abstract—A common technique for dealing with the curse of dimensionality in approximate dynamic programming is to use a parametric value function approximation, where the value of being in a state is assumed to be a linear combination of basis functions. Even with this simplification, we face the ex ..."
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Cited by 2 (1 self)
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Abstract—A common technique for dealing with the curse of dimensionality in approximate dynamic programming is to use a parametric value function approximation, where the value of being in a state is assumed to be a linear combination of basis functions. Even with this simplification, we face the exploration/exploitation dilemma: an inaccurate approximation may lead to poor decisions, making it necessary to sometimes explore actions that appear to be suboptimal. We propose a Bayesian strategy for active learning with basis functions, based on the knowledge gradient concept from the optimal learning literature. The new method performs well in numerical experiments conducted on an energy storage problem. I.
Journal of Machine Learning Research () Submitted; Published Hierarchical Knowledge Gradient for Sequential Sampling
"... Editor: We consider the problem of selecting the best of a finite but very large set of alternatives. Each alternative may be characterized by a multi-dimensional vector and has independent normal rewards. This problem arises in settings such as (i) ranking and selection, (ii) simulation optimizatio ..."
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Editor: We consider the problem of selecting the best of a finite but very large set of alternatives. Each alternative may be characterized by a multi-dimensional vector and has independent normal rewards. This problem arises in settings such as (i) ranking and selection, (ii) simulation optimization where the unknown mean of each alternative is estimated with stochastic simulation output, and (iii) approximate dynamic programming where we need to estimate values based on Monte-Carlo simulation. We use a Bayesian probability model for the unknown reward of each alternative and follow a fully sequential sampling policy called the knowledge-gradient policy. This policy myopically optimizes the expected increment in the value of sampling information in each time period. Because the number of alternatives is large, we propose a hierarchical aggregation technique that uses the common features shared by alternatives to learn about many alternatives from even a single measurement, thus greatly reducing the measurement effort required. We demonstrate how this hierarchical knowledge-gradient policy can be applied to efficiently maximize a continuous function and prove that this policy finds a globally optimal alternative in the limit.
Hierarchical Knowledge-Gradient for Sequential Sampling
, 2009
"... We consider the problem of selecting the best of a finite but very large set of alternatives. Each alternative may be characterized by a multi-dimensional vector and has independent normal rewards. This problem arises in various settings such as (i) ranking and selection, (ii) simulation optimizatio ..."
Abstract
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We consider the problem of selecting the best of a finite but very large set of alternatives. Each alternative may be characterized by a multi-dimensional vector and has independent normal rewards. This problem arises in various settings such as (i) ranking and selection, (ii) simulation optimization where the unknown mean of each alternative is estimated with stochastic simulation output, and (iii) approximate dynamic programming where we need to estimate values based on Monte-Carlo simulation. We use a Bayesian probability model for the unknown reward of each alternative and follow a fully sequential sampling policy called the knowledge-gradient policy. This policy myopically optimizes the expected increment in the value of sampling information in each time period. Because the number of alternatives is large, we propose a hierarchical aggregation technique that uses the common features shared by alternatives to learn about many alternatives from even a single measurement, thus greatly reducing the measurement effort required. We demonstrate how this hierarchical knowledge-gradient policy can be applied to efficiently maximize a continuous function and prove that this policy finds a globally optimal alternative in the limit.
A Monte Carlo Knowledge Gradient Method For Learning Abatement Potential Of Emissions Reduction Technologies
"... Suppose that we have a set of emissions reduction technologies whose greenhouse gas abatement potential is unknown, and we wish to find an optimal portfolio (subset) of these technologies. Due to the interaction between technologies, the effectiveness of a portfolio can only be observed through expe ..."
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Suppose that we have a set of emissions reduction technologies whose greenhouse gas abatement potential is unknown, and we wish to find an optimal portfolio (subset) of these technologies. Due to the interaction between technologies, the effectiveness of a portfolio can only be observed through expensive field implementations. We view this problem as an online optimal learning problem with correlated prior beliefs, where the performance of a portfolio of technologies in one project is used to guide choices for future projects. Given the large number of potential portfolios, we propose a learning policy which uses Monte Carlo sampling to narrow down the choice set to a relatively small number of promising portfolios, and then applies a one-period look-ahead approach using knowledge gradients to choose among this reduced set. We present experimental evidence that this policy is competitive against other online learning policies that consider the entire choice set. 1
Optimal Information Blending with Measurements in the L2 Sphere
"... manuscript (Please, provide the mansucript number!) Authors are encouraged to submit new papers to INFORMS journals by means of a style file template, which includes the journal title. However, use of a template does not certify that the paper has been accepted for publication in the named journal. ..."
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manuscript (Please, provide the mansucript number!) Authors are encouraged to submit new papers to INFORMS journals by means of a style file template, which includes the journal title. However, use of a template does not certify that the paper has been accepted for publication in the named journal. INFORMS journal templates are for the exclusive purpose of submitting to an INFORMS journal and should not be used to distribute the papers in print or online or to submit the papers to another publication.
© 2012 INFORMS The Knowledge Gradient Algorithm for a General Class of Online Learning Problems
"... We derive a one-period look-ahead policy for finite- and infinite-horizon online optimal learning problems with Gaussian rewards. Our approach is able to handle the case where our prior beliefs about the rewards are correlated, which is not handled by traditional multiarmed bandit methods. Experimen ..."
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We derive a one-period look-ahead policy for finite- and infinite-horizon online optimal learning problems with Gaussian rewards. Our approach is able to handle the case where our prior beliefs about the rewards are correlated, which is not handled by traditional multiarmed bandit methods. Experiments show that our KG policy performs competitively against the best-known approximation to the optimal policy in the classic bandit problem, and it outperforms many learning policies in the correlated case. Subject classifications: multiarmed bandit; optimal learning; online learning; knowledge gradient; Gittins index; index policy.

