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82
Hierarchical Dirichlet processes
- Journal of the American Statistical Association
, 2004
"... program. The authors wish to acknowledge helpful discussions with Lancelot James and Jim Pitman and the referees for useful comments. 1 We consider problems involving groups of data, where each observation within a group is a draw from a mixture model, and where it is desirable to share mixture comp ..."
Abstract
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Cited by 328 (44 self)
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program. The authors wish to acknowledge helpful discussions with Lancelot James and Jim Pitman and the referees for useful comments. 1 We consider problems involving groups of data, where each observation within a group is a draw from a mixture model, and where it is desirable to share mixture components between groups. We assume that the number of mixture components is unknown a priori and is to be inferred from the data. In this setting it is natural to consider sets of Dirichlet processes, one for each group, where the well-known clustering property of the Dirichlet process provides a nonparametric prior for the number of mixture components within each group. Given our desire to tie the mixture models in the various groups, we consider a hierarchical model, specifically one in which the base measure for the child Dirichlet processes is itself distributed according to a Dirichlet process. Such a base measure being discrete, the child Dirichlet processes necessar-ily share atoms. Thus, as desired, the mixture models in the different groups necessarily share mixture components. We discuss representations of hierarchical Dirichlet processes in terms of
Model-Based Clustering, Discriminant Analysis, and Density Estimation
- JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION
, 2000
"... Cluster analysis is the automated search for groups of related observations in a data set. Most clustering done in practice is based largely on heuristic but intuitively reasonable procedures and most clustering methods available in commercial software are also of this type. However, there is little ..."
Abstract
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Cited by 171 (23 self)
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Cluster analysis is the automated search for groups of related observations in a data set. Most clustering done in practice is based largely on heuristic but intuitively reasonable procedures and most clustering methods available in commercial software are also of this type. However, there is little systematic guidance associated with these methods for solving important practical questions that arise in cluster analysis, such as \How many clusters are there?", "Which clustering method should be used?" and \How should outliers be handled?". We outline a general methodology for model-based clustering that provides a principled statistical approach to these issues. We also show that this can be useful for other problems in multivariate analysis, such as discriminant analysis and multivariate density estimation. We give examples from medical diagnosis, mineeld detection, cluster recovery from noisy data, and spatial density estimation. Finally, we mention limitations of the methodology, a...
Gibbs Sampling Methods for Stick-Breaking Priors
"... ... In this paper we present two general types of Gibbs samplers that can be used to fit posteriors of Bayesian hierarchical models based on stick-breaking priors. The first type of Gibbs sampler, referred to as a Polya urn Gibbs sampler, is a generalized version of a widely used Gibbs sampling meth ..."
Abstract
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Cited by 160 (16 self)
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... In this paper we present two general types of Gibbs samplers that can be used to fit posteriors of Bayesian hierarchical models based on stick-breaking priors. The first type of Gibbs sampler, referred to as a Polya urn Gibbs sampler, is a generalized version of a widely used Gibbs sampling method currently employed for Dirichlet process computing. This method applies to stick-breaking priors with a known P'olya urn characterization; that is priors with an explicit and simple prediction rule. Our second method, the blocked Gibbs sampler, is based on a entirely different approach that works by directly sampling values from the posterior of the random measure. The blocked Gibbs sampler can be viewed as a more general approach as it works without requiring an explicit prediction rule. We find that the blocked Gibbs avoids some of the limitations seen with the Polya urn approach and should be simpler for non-experts to use.
Practical Bayesian Density Estimation Using Mixtures Of Normals
- Journal of the American Statistical Association
, 1995
"... this paper, we propose some solutions to these problems. Our goal is to come up with a simple, practical method for estimating the density. This is an interesting problem in its own right, as well as a first step towards solving other inference problems, such as providing more flexible distributions ..."
Abstract
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Cited by 88 (2 self)
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this paper, we propose some solutions to these problems. Our goal is to come up with a simple, practical method for estimating the density. This is an interesting problem in its own right, as well as a first step towards solving other inference problems, such as providing more flexible distributions in hierarchical models. To see why the posterior is improper under the usual reference prior, we write the model in the following way. Let Z = (Z 1 ; : : : ; Z n ) and X = (X 1 ; : : : ; X n ). The Z
Hierarchical Priors and Mixture Models, With Application in Regression and Density Estimation
, 1993
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Sequential Importance Sampling for Nonparametric Bayes Models: The Next Generation
- Journal of Statistics
, 1998
"... this paper, we exploit the similarities between the Gibbs sampler and the SIS, bringing over the improvements for Gibbs sampling algorithms to the SIS setting for nonparametric Bayes problems. These improvements result in an improved sampler and help satisfy questions of Diaconis (1995) pertaining t ..."
Abstract
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Cited by 61 (5 self)
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this paper, we exploit the similarities between the Gibbs sampler and the SIS, bringing over the improvements for Gibbs sampling algorithms to the SIS setting for nonparametric Bayes problems. These improvements result in an improved sampler and help satisfy questions of Diaconis (1995) pertaining to convergence. Such an effort can see wide applications in many other problems related to dynamic systems where the SIS is useful (Berzuini et al. 1996; Liu and Chen 1996). Section 2 describes the specific model that we consider. For illustration we focus discussion on the beta-binomial model, although the methods are applicable to other conjugate families. In Section 3, we describe the first generation of the SIS and Gibbs sampler in this context, and present the necessary conditional distributions upon which the techniques rely. Section 4 describes the alterations that create the second generation techniques, and provides specific algorithms for the model we consider. Section 5 presents a comparison of the techniques on a large set of data. Section 6 provides theory that ensures the proposed methods work and that is generally applicable to many other problems using importance sampling approaches. The final section presents discussion. 2 The Model
Modelling heterogeneity with and without the Dirichlet process
, 2001
"... We investigate the relationships between Dirichlet process (DP) based models and allocation models for a variable number of components, based on exchangeable distributions. It is shown that the DP partition distribution is a limiting case of a Dirichlet± multinomial allocation model. Comparisons of ..."
Abstract
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Cited by 49 (3 self)
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We investigate the relationships between Dirichlet process (DP) based models and allocation models for a variable number of components, based on exchangeable distributions. It is shown that the DP partition distribution is a limiting case of a Dirichlet± multinomial allocation model. Comparisons of posterior performance of DP and allocation models are made in the Bayesian paradigm and illustrated in the context of univariate mixture models. It is shown in particular that the unbalancedness of the allocation distribution, present in the prior DP model, persists a posteriori. Exploiting the model connections, a new MCMC sampler for general DP based models is introduced, which uses split/merge moves in a reversible jump framework. Performance of this new sampler relative to that of some traditional samplers for DP processes is then explored.
MCMC-based particle filtering for tracking a variable number of interacting targets
- IEEE Transactions on Pattern Analysis and Machine Intelligence
, 2005
"... We describe a particle filter that effectively deals with interacting targets- targets that are influenced by the proximity and/or behavior of other targets. The particle filter includes a Markov random field (MRF) motion prior that helps maintain the identity of targets throughout an interaction, s ..."
Abstract
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Cited by 47 (3 self)
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We describe a particle filter that effectively deals with interacting targets- targets that are influenced by the proximity and/or behavior of other targets. The particle filter includes a Markov random field (MRF) motion prior that helps maintain the identity of targets throughout an interaction, significantly reducing tracker failures. We show that this MRF prior can be easily implemented by including an additional interaction factor in the importance weights of the particle filter. However, the computational requirements of the resulting multi-target filter render it unusable for large numbers of targets. Conse-quently, we replace the traditional importance sampling step in the particle filter with a novel Markov chain Monte Carlo (MCMC) sampling step to obtain a more efficient MCMC-based multi-target filter. We also show how to extend this MCMC-based filter to address a variable number of interacting targets. Finally, we present both qualitative and quantitative experimental results, demonstrating that the resulting particle filters deal efficiently and effectively with complicated target interactions.
Generalized weighted Chinese restaurant processes for species sampling mixture models
- Statistica Sinica
, 2003
"... Abstract: The class of species sampling mixture models is introduced as an extension of semiparametric models based on the Dirichlet process to models based on the general class of species sampling priors, or equivalently the class of all exchangeable urn distributions. Using Fubini calculus in conj ..."
Abstract
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Cited by 36 (8 self)
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Abstract: The class of species sampling mixture models is introduced as an extension of semiparametric models based on the Dirichlet process to models based on the general class of species sampling priors, or equivalently the class of all exchangeable urn distributions. Using Fubini calculus in conjunction with Pitman (1995, 1996), we derive characterizations of the posterior distribution in terms of a posterior partition distribution that extend the results of Lo (1984) for the Dirichlet process. These results provide a better understanding of models and have both theoretical and practical applications. To facilitate the use of our models we generalize the work in Brunner, Chan, James and Lo (2001) by extending their weighted Chinese restaurant (WCR) Monte Carlo procedure, an i.i.d. sequential importance sampling (SIS) procedure for approximating posterior mean functionals based on the Dirichlet process, to the case of approximation of mean functionals and additionally their posterior laws in species sampling mixture models. We also discuss collapsed Gibbs sampling, Pólya urn Gibbs sampling and a Pólya urn SIS scheme. Our framework allows for numerous applications, including multiplicative counting process models subject to weighted gamma processes, as well as nonparametric and semiparametric hierarchical models based on the Dirichlet process, its two-parameter extension, the Pitman-Yor process and finite dimensional Dirichlet priors. Key words and phrases: Dirichlet process, exchangeable partition, finite dimensional Dirichlet prior, two-parameter Poisson-Dirichlet process, prediction rule, random probability measure, species sampling sequence.

