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Bayesian flexible shape matching with applications to structural bioinformatics. (submitted to
- Journal of the American Statistical Association
, 2006
"... We introduce a method for flexible shape registration using Bayesian changepoint analysis. Our approach is particularly suitable for shapes containing “hinge”-like flexibility, and is motivated by problems in structural proteomics and bioinformatics. We define a class of flexible shape spaces and an ..."
Abstract
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Cited by 3 (2 self)
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We introduce a method for flexible shape registration using Bayesian changepoint analysis. Our approach is particularly suitable for shapes containing “hinge”-like flexibility, and is motivated by problems in structural proteomics and bioinformatics. We define a class of flexible shape spaces and an associated Procrustes-type metric, along with a highly efficient algorithm for computing flexible shape distance. We use this distance to define distributions over flexible shapes, and develop Bayesian models for several variants including both affine and rigid-body component transformations. We demonstrate the approach on several examples arising from protein structure analysis, including structure alignment and function discovery.
Gaussian-Weighted RMSD Superposition of Proteins: A Structural Comparison for Flexible Proteins and Predicted Protein Structures
, 2006
"... This un-edited manuscript has been accepted for publication in Biophysical Journal and is freely available on BioFAST at www.biophysj.org. The final copyedited version of the paper may be found at www.biophysj.org. ..."
Abstract
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Cited by 2 (0 self)
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This un-edited manuscript has been accepted for publication in Biophysical Journal and is freely available on BioFAST at www.biophysj.org. The final copyedited version of the paper may be found at www.biophysj.org.
BMC Structural Biology BioMed Central
, 2009
"... Research article Large-scale evaluation of dynamically important residues in proteins predicted by the perturbation analysis of a coarse-grained elastic model ..."
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Research article Large-scale evaluation of dynamically important residues in proteins predicted by the perturbation analysis of a coarse-grained elastic model

