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A Compositional Approach to Performance Modelling (1996)

by J Hillston
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The PEPA Workbench: A Tool to Support a Process Algebra-based Approach to Performance Modelling

by Stephen Gilmore, Jane Hillston - In Proceedings of the Seventh International Conference on Modelling Techniques and Tools for Computer Performance Evaluation, number 794 in Lecture Notes in Computer Science , 1994
"... . In this paper we present a new technique for performance modelling and a tool supporting this approach. Performance Evaluation Process Algebra (PEPA) [1] is an algebraic language which can beused to build models of computer systems which capture information about the performance of the system. The ..."
Abstract - Cited by 139 (54 self) - Add to MetaCart
. In this paper we present a new technique for performance modelling and a tool supporting this approach. Performance Evaluation Process Algebra (PEPA) [1] is an algebraic language which can beused to build models of computer systems which capture information about the performance of the system. The PEPA language serves two purposes as a formal description language for computer system models. The performance-related information in the model may be used to predict the performance of the system whereas the behavioural information in the model may be exploited when reasoning about the functional behaviour of the system (e.g. when finding deadlocks or when exhibiting equivalences between sub-components). In this paper we concentrate on the performance aspects of the language. A method of reasoningaboutPEPA modelsproceedsby considering the derivation graph obtained from the model using the underlying operational semantics of the PEPA language. The derivation graph is systematically reduced ...

Probabilistic Symbolic Model Checking with PRISM: A Hybrid Approach

by Marta Kwiatkowska, Gethin Norman, David Parker - International Journal on Software Tools for Technology Transfer (STTT , 2002
"... In this paper we introduce PRISM, a probabilistic model checker, and describe the ecient symbolic techniques we have developed during its implementation. PRISM is a tool for analysing probabilistic systems. It supports three models: discrete-time Markov chains, continuous-time Markov chains and ..."
Abstract - Cited by 115 (22 self) - Add to MetaCart
In this paper we introduce PRISM, a probabilistic model checker, and describe the ecient symbolic techniques we have developed during its implementation. PRISM is a tool for analysing probabilistic systems. It supports three models: discrete-time Markov chains, continuous-time Markov chains and Markov decision processes. Analysis is performed through model checking speci cations in the probabilistic temporal logics PCTL and CSL. Motivated by the success of model checkers such as SMV, which use BDDs (binary decision diagrams), we have developed an implementation of PCTL and CSL model checking based on MTBDDs (multi-terminal BDDs) and BDDs. Existing work in this direction has been hindered by the generally poor performance of MTBDD-based numerical computation, which is often substantially slower than explicit methods using sparse matrices. We present a novel hybrid technique which combines aspects of symbolic and explicit approaches to overcome these performance problems. For typical examples, we achieve orders of magnitude speed-up compared to MTBDDs and are able to almost match the speed of sparse matrices whilst maintaining considerable space savings.

Model-checking algorithms for continuous-time Markov chains

by Christel Baier, Boudewijn Haverkort, Holger Hermanns, Joost-Pieter Katoen - IEEE TRANSACTIONS ON SOFTWARE ENGINEERING , 2003
"... Continuous-time Markov chains (CTMCs) have been widely used to determine system performance and dependability characteristics. Their analysis most often concerns the computation of steady-state and transient-state probabilities. This paper introduces a branching temporal logic for expressing real-t ..."
Abstract - Cited by 94 (20 self) - Add to MetaCart
Continuous-time Markov chains (CTMCs) have been widely used to determine system performance and dependability characteristics. Their analysis most often concerns the computation of steady-state and transient-state probabilities. This paper introduces a branching temporal logic for expressing real-time probabilistic properties on CTMCs and presents approximate model checking algorithms for this logic. The logic, an extension of the continuous stochastic logic CSL of Aziz et al., contains a time-bounded until operator to express probabilistic timing properties over paths as well as an operator to express steady-state probabilities. We show that the model checking problem for this logic reduces to a system of linear equations (for unbounded until and the steady-state operator) and a Volterra integral equation system (for time-bounded until). We then show that the problem of model-checking timebounded until properties can be reduced to the problem of computing transient state probabilities for CTMCs. This allows the verification of probabilistic timing properties by efficient techniques for transient analysis for CTMCs such as uniformization. Finally, we show that a variant of lumping equivalence (bisimulation), a well-known notion for aggregating CTMCs, preserves the validity of all formulas in the logic.

A tutorial on EMPA: A theory of concurrent processes with nondeterminism, priorities, probabilities and time

by Marco Bernardo, Roberto Gorrieri - Theoretical Computer Science , 1998
"... In this tutorial we give an overview of the process algebra EMPA, a calculus devised in order to model and analyze features of real-world concurrent systems such as nondeterminism, priorities, probabilities and time, with a particular emphasis on performance evaluation. The purpose of this tutorial ..."
Abstract - Cited by 82 (9 self) - Add to MetaCart
In this tutorial we give an overview of the process algebra EMPA, a calculus devised in order to model and analyze features of real-world concurrent systems such as nondeterminism, priorities, probabilities and time, with a particular emphasis on performance evaluation. The purpose of this tutorial is to explain the design choices behind the development of EMPA and how the four features above interact, and to show that a reasonable trade off between the expressive power of the calculus and the complexity of its underlying theory has been achieved.

Modelling the influence of RKIP on the ERK signalling pathway using the stochastic process algebra PEPA

by Muffy Calder, Stephen Gilmore, Jane Hillston - Transactions on Computational Systems Biology , 2004
"... Abstract. This paper examines the influence of the Raf Kinase Inhibitor Protein (RKIP) on the Extracellular signal Regulated Kinase (ERK) signalling pathway [5] through modelling in a Markovian process algebra, PEPA [11]. Two models of the system are presented, a reagentcentric view and a pathway-ce ..."
Abstract - Cited by 70 (24 self) - Add to MetaCart
Abstract. This paper examines the influence of the Raf Kinase Inhibitor Protein (RKIP) on the Extracellular signal Regulated Kinase (ERK) signalling pathway [5] through modelling in a Markovian process algebra, PEPA [11]. Two models of the system are presented, a reagentcentric view and a pathway-centric view. The models capture functionality at the level of subpathway, rather than at a molecular level. Each model affords a different perspective of the pathway and analysis. We demonstrate the two models to be formally equivalent using the timingaware bisimulation defined over PEPA models and discuss the biological significance. 1

Model checking continuous-time Markov chains by transient analysis

by Christel Baier, Boudewijn Haverkort, Holger Hermanns, Joost-Pieter Katoen , 2000
"... . The verification of continuous-time Markov chains (CTMCs) against continuous stochastic logic (CSL) [3, 6], a stochastic branchingtime temporal logic, is considered. CSL facilitates among others the specification of steady-state properties and the specification of probabilistic timing properties o ..."
Abstract - Cited by 63 (17 self) - Add to MetaCart
. The verification of continuous-time Markov chains (CTMCs) against continuous stochastic logic (CSL) [3, 6], a stochastic branchingtime temporal logic, is considered. CSL facilitates among others the specification of steady-state properties and the specification of probabilistic timing properties of the form P# #p(#1 U I #2 ), for state formulas #1 and #2 , comparison operator ##, probability p, and real interval I. The main result of this paper is that model checking probabilistic timing properties can be reduced to the problem of computing transient state probabilities for CTMCs. This allows us to verify such properties by using e#cient techniques for transient analysis of CTMCs such as uniformisation. A second result is that a variant of ordinary lumping equivalence (i.e., bisimulation), a well-known notion for aggregating CTMCs, preserves the validity of all CSL-formulas. In 12th Annual Symposium on Computer Aided Verification, CAV 2000, c # Springer-Verlag 2000 Chicago,...

The Möbius Framework and Its Implementation

by Daniel D. Deavours, Graham Clark, Tod Courtney, David Daly, Salem Derisavi, Jay M. Doyle, William H. Sanders, Patrick G. Webster
"... The Möbius framework is an environment for supporting multiple modeling formalisms and solution techniques. Models expressed in formalisms that are compatible with the framework are translated into equivalent models using Mobius framework components. This translation preserves the structure of the m ..."
Abstract - Cited by 60 (18 self) - Add to MetaCart
The Möbius framework is an environment for supporting multiple modeling formalisms and solution techniques. Models expressed in formalisms that are compatible with the framework are translated into equivalent models using Mobius framework components. This translation preserves the structure of the models, allowing e#cient solutions. The framework is implemented in the tool by a well-defined abstract functional interface. Models and solution techniques interact with one another through the use of the standard interface, allowing them to interact with Mobius framework components, not formalism components. This permits novel combinations of modeling techniques, and will be a catalyst for new research in modeling techniques. This paper describes our approach, focusing on the "atomic model." We describe the formal description of the Mobius components as well as their implementations in our software tool.

The Möbius Modeling Tool

by Graham Clark, Tod Courtney, David Daly, Dan Deavours, Salem Derisavi, Jay M. Doyle, William H. Sanders, Patrick Webster - IN PROCEEDINGS OF THE 9TH INTERNATIONAL WORKSHOP ON PETRI NETS AND PERFORMANCE MODELS
"... Despite the development of many modeling formalisms and model solution methods, most tool implementations support only a single formalism. Furthermore, models expressed in the chosen formalism cannot be combined with models expressed in other formalisms. This monolithic approach both limits the usef ..."
Abstract - Cited by 55 (12 self) - Add to MetaCart
Despite the development of many modeling formalisms and model solution methods, most tool implementations support only a single formalism. Furthermore, models expressed in the chosen formalism cannot be combined with models expressed in other formalisms. This monolithic approach both limits the usefulness of such tools to practitioners, and hampers new and existing formalisms and solvers. This paper describes the method that a new modeling tool, cal led Mobius, uses to eliminate these limitations. Mobius provides an infrastructure to support multiple interacting formalisms and solvers, and is extensible in that new formalisms and solvers can be added to the tool without changing those already implemented. Mobius provides this capability through the use of an abstract functional interface, which provides a formalism-independent interface to models. This allows models expressed in multiple formalisms to interact with each other, and with multiple solvers.

Compositional Markovian modelling using a process algebra

by J. Hillston - Numerical Solution of Markov Chains , 1995
"... We introduce a stochastic process algebra, PEPA, as a high-level modelling paradigm for con-tinuous time Markov chains (CTMC). Process algebras are mathematical theories which model concurrent systems by their algebra and provide apparatus for reasoning about the structure and behaviour of the model ..."
Abstract - Cited by 48 (12 self) - Add to MetaCart
We introduce a stochastic process algebra, PEPA, as a high-level modelling paradigm for con-tinuous time Markov chains (CTMC). Process algebras are mathematical theories which model concurrent systems by their algebra and provide apparatus for reasoning about the structure and behaviour of the model. Recent extensions of these algebras, associating random variables with actions, make the models also amenable to Markovian analysis. A compositional structure is inherent in the PEPA language. As well as the clear advantages that this offers for model construction, we demonstrate how this compositionality may be exploited to reduce the state space of the CTMC. This leads to an exact aggregation based on lumpability. Moreover this technique, taking advantage of symmetries within the system, may be formally defined in terms of the PEPA description of the model. An equivalence relation, strong equivalence, developed as a process algebra bisimulation relation, is used to partition the derivation graph. 1

Probabilistic model checking of complex biological pathways

by J. Heath, M. Kwiatkowska, G. Norman, D. Parker, O. Tymchyshyn , 2006
"... Abstract. Probabilistic model checking is a formal verification technique that has been successfully applied to the analysis of systems from a broad range of domains, including security and communication protocols, distributed algorithms and power management. In this paper we illustrate its applicab ..."
Abstract - Cited by 46 (10 self) - Add to MetaCart
Abstract. Probabilistic model checking is a formal verification technique that has been successfully applied to the analysis of systems from a broad range of domains, including security and communication protocols, distributed algorithms and power management. In this paper we illustrate its applicability to a complex biological system: the FGF (Fibroblast Growth Factor) signalling pathway. We give a detailed description of how this case study can be modelled in the probabilistic model checker PRISM, discussing some of the issues that arise in doing so, and show how we can thus examine a rich selection of quantitative properties of this model. We present experimental results for the case study under several different scenarios and provide a detailed analysis, illustrating how this approach can be used to yield a better understanding of the dynamics of the pathway. 1
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