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54
Optimal Structure Identification with Greedy Search
, 2002
"... In this paper we prove the socalled "Meek Conjecture". In particular, we show that if a is an independence map of another DAG then there exists a finite sequence of edge additions and covered edge reversals in such that (1) after each edge modification and (2) after all mod ..."
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Cited by 159 (1 self)
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In this paper we prove the socalled "Meek Conjecture". In particular, we show that if a is an independence map of another DAG then there exists a finite sequence of edge additions and covered edge reversals in such that (1) after each edge modification and (2) after all modifications H.
ANCESTRAL GRAPH MARKOV MODELS
, 2002
"... This paper introduces a class of graphical independence models that is closed under marginalization and conditioning but that contains all DAG independence models. This class of graphs, called maximal ancestral graphs, has two attractive features: there is at most one edge between each pair of verti ..."
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Cited by 74 (16 self)
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This paper introduces a class of graphical independence models that is closed under marginalization and conditioning but that contains all DAG independence models. This class of graphs, called maximal ancestral graphs, has two attractive features: there is at most one edge between each pair of vertices; every missing edge corresponds to an independence relation. These features lead to a simple parameterization of the corresponding set of distributions in the Gaussian case.
Algebraic Geometry of Bayesian Networks
 Journal of Symbolic Computation
, 2005
"... We study the algebraic varieties defined by the conditional independence statements of Bayesian networks. A complete algebraic classification is given for Bayesian networks on at most five random variables. Hidden variables are related to the geometry of higher secant varieties. 1 ..."
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Cited by 55 (5 self)
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We study the algebraic varieties defined by the conditional independence statements of Bayesian networks. A complete algebraic classification is given for Bayesian networks on at most five random variables. Hidden variables are related to the geometry of higher secant varieties. 1
Hierarchical Latent Class Models for Cluster Analysis
 Journal of Machine Learning Research
, 2002
"... Latent class models are used for cluster analysis of categorical data. Underlying such a model is the assumption that the observed variables are mutually independent given the class variable. A serious problem with the use of latent class models, known as local dependence, is that this assumption is ..."
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Cited by 47 (12 self)
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Latent class models are used for cluster analysis of categorical data. Underlying such a model is the assumption that the observed variables are mutually independent given the class variable. A serious problem with the use of latent class models, known as local dependence, is that this assumption is often untrue. In this paper we propose hierarchical latent class models as a framework where the local dependence problem can be addressed in a principled manner. We develop a searchbased algorithm for learning hierarchical latent class models from data. The algorithm is evaluated using both synthetic and realworld data.
On the toric algebra of graphical models
, 2006
"... We formulate necessary and sufficient conditions for an arbitrary discrete probability distribution to factor according to an undirected graphical model, or a loglinear model, or other more general exponential models. For decomposable graphical models these conditions are equivalent to a set of con ..."
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Cited by 34 (6 self)
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We formulate necessary and sufficient conditions for an arbitrary discrete probability distribution to factor according to an undirected graphical model, or a loglinear model, or other more general exponential models. For decomposable graphical models these conditions are equivalent to a set of conditional independence statements similar to the Hammersley–Clifford theorem; however, we show that for nondecomposable graphical models they are not. We also show that nondecomposable models can have nonrational maximum likelihood estimates. These results are used to give several novel characterizations of decomposable graphical models.
Asymptotic Model Selection for Naive Bayesian Networks
 In Proc. of the 18th Conference on Uncertainty in Artificial Intelligence (UAI02
, 2002
"... We develop a closed form asymptotic formula to compute the marginal likelihood of data given a naive Bayesian network model with two hidden states and binary features. ..."
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Cited by 30 (3 self)
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We develop a closed form asymptotic formula to compute the marginal likelihood of data given a naive Bayesian network model with two hidden states and binary features.
Algebraic factor analysis: tetrads, pentads and beyond
"... Factor analysis refers to a statistical model in which observed variables are conditionally independent given fewer hidden variables, known as factors, and all the random variables follow a multivariate normal distribution. The parameter space of a factor analysis model is a subset of the cone of po ..."
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Cited by 27 (11 self)
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Factor analysis refers to a statistical model in which observed variables are conditionally independent given fewer hidden variables, known as factors, and all the random variables follow a multivariate normal distribution. The parameter space of a factor analysis model is a subset of the cone of positive definite matrices. This parameter space is studied from the perspective of computational algebraic geometry. Gröbner bases and resultants are applied to compute the ideal of all polynomial functions that vanish on the parameter space. These polynomials, known as model invariants, arise from rank conditions on a symmetric matrix under elimination of the diagonal entries of the matrix. Besides revealing the geometry of the factor analysis model, the model invariants also furnish useful statistics for testing goodnessoffit. 1
Learning the Similarity of Documents: An InformationGeometric Approach to Document Retrieval and Categorization
, 2000
"... The project pursued in this paper is to develop from rst informationgeometric principles a general method for learning the similarity between text documents. Each individual document is modeled as a memoryless information source. Based on a latent class decomposition of the termdocument matrix ..."
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Cited by 22 (0 self)
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The project pursued in this paper is to develop from rst informationgeometric principles a general method for learning the similarity between text documents. Each individual document is modeled as a memoryless information source. Based on a latent class decomposition of the termdocument matrix, a lowdimensional (curved) multinomial subfamily is learned. From this model a canonical similarity function  known as the Fisher kernel  is derived. Our approach can be applied for unsupervised and supervised learning problems alike. This in particular covers interesting cases where both, labeled and unlabeled data are available. Experiments in automated indexing and text categorization verify the advantages of the proposed method.
Binary models for marginal independence
 JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B
, 2005
"... A number of authors have considered multivariate Gaussian models for marginal independence. In this paper we develop models for binary data with the same independence structure. The models can be parameterized based on Möbius inversion and maximum likelihood estimation can be performed using a versi ..."
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Cited by 16 (2 self)
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A number of authors have considered multivariate Gaussian models for marginal independence. In this paper we develop models for binary data with the same independence structure. The models can be parameterized based on Möbius inversion and maximum likelihood estimation can be performed using a version of the Iterated Conditional Fitting algorithm. The approach is illustrated on a simple example. Relations to multivariate logistic and dependence ratio models are discussed.