Using parsimony to guide maximum likelihood searches (2007)

by K Sundberg, T O’Connor, H Carroll, M Clement, Q Snell
Venue:In Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, volume II
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BIOLOGICALLY RELEVANT MULTIPLE SEQUENCE ALIGNMENT

by Hyrum D. Carroll, Hyrum D. Carroll, Mark J. Clement, Quinn O. Snell, David A. Mcclellan, Brigham Young University, Mark J. Clement, Kent E. Seamons, Thomas W. Sederberg, Hyrum D. Carroll , 2008
"... of a dissertation submitted by ..."
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of a dissertation submitted by

PSODA: Better Tasting and Less Filling Than PAUP

by Hyrum Carroll, Mark Ebbert, Mark Clement, Quinn Snell
"... Abstract—PSODA is an open-source phylogenetic search application that implements traditional parsimony and likelihood search techniques as well as advanced search algorithms. PSODA is compatible with PAUP and the search algorithms are competitive with those in PAUP. PSODA also adds a basic scripting ..."
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Abstract—PSODA is an open-source phylogenetic search application that implements traditional parsimony and likelihood search techniques as well as advanced search algorithms. PSODA is compatible with PAUP and the search algorithms are competitive with those in PAUP. PSODA also adds a basic scripting language to the PAUP block, making it possible to easily create advanced meta-searches. Additionally, PSODA provides a user-friendly GUI with real-time graphing visualizations and phylogeny viewer, and a multiple sequence alignment algorithm PSODA is freely available from the PSODA web site:

alignment

by Hyrum Carroll, Adam Teichert, Jonathan Krein, Kenneth Sundberg
"... An open source phylogenetic search and ..."
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An open source phylogenetic search and