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461
Deeper inside pagerank
 Internet Mathematics
, 2004
"... Abstract. This paper serves as a companion or extension to the “Inside PageRank” paper by Bianchini et al. [Bianchini et al. 03]. It is a comprehensive survey of all issues associated with PageRank, covering the basic PageRank model, available and recommended solution methods, storage issues, existe ..."
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Cited by 142 (4 self)
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Abstract. This paper serves as a companion or extension to the “Inside PageRank” paper by Bianchini et al. [Bianchini et al. 03]. It is a comprehensive survey of all issues associated with PageRank, covering the basic PageRank model, available and recommended solution methods, storage issues, existence, uniqueness, and convergence properties, possible alterations to the basic model, suggested alternatives to the traditional solution methods, sensitivity and conditioning, and finally the updating problem. We introduce a few new results, provide an extensive reference list, and speculate about exciting areas of future research. 1.
Modelchecking algorithms for continuoustime Markov chains
 IEEE TRANSACTIONS ON SOFTWARE ENGINEERING
, 2003
"... Continuoustime Markov chains (CTMCs) have been widely used to determine system performance and dependability characteristics. Their analysis most often concerns the computation of steadystate and transientstate probabilities. This paper introduces a branching temporal logic for expressing realt ..."
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Cited by 128 (26 self)
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Continuoustime Markov chains (CTMCs) have been widely used to determine system performance and dependability characteristics. Their analysis most often concerns the computation of steadystate and transientstate probabilities. This paper introduces a branching temporal logic for expressing realtime probabilistic properties on CTMCs and presents approximate model checking algorithms for this logic. The logic, an extension of the continuous stochastic logic CSL of Aziz et al., contains a timebounded until operator to express probabilistic timing properties over paths as well as an operator to express steadystate probabilities. We show that the model checking problem for this logic reduces to a system of linear equations (for unbounded until and the steadystate operator) and a Volterra integral equation system (for timebounded until). We then show that the problem of modelchecking timebounded until properties can be reduced to the problem of computing transient state probabilities for CTMCs. This allows the verification of probabilistic timing properties by efficient techniques for transient analysis for CTMCs such as uniformization. Finally, we show that a variant of lumping equivalence (bisimulation), a wellknown notion for aggregating CTMCs, preserves the validity of all formulas in the logic.
Approximate symbolic model checking of continuoustime Markov chains (Extended Abstract)
, 1999
"... . This paper presents a symbolic model checking algorithm for continuoustime Markov chains for an extension of the continuous stochastic logic CSL of Aziz et al [1]. The considered logic contains a timebounded untiloperator and a novel operator to express steadystate probabilities. We show that t ..."
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Cited by 124 (21 self)
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. This paper presents a symbolic model checking algorithm for continuoustime Markov chains for an extension of the continuous stochastic logic CSL of Aziz et al [1]. The considered logic contains a timebounded untiloperator and a novel operator to express steadystate probabilities. We show that the model checking problem for this logic reduces to a system of linear equations (for unbounded until and the steady stateoperator) and a Volterra integral equation system for timebounded until. We propose a symbolic approximate method for solving the integrals using MTDDs (multiterminal decision diagrams), a generalisation of MTBDDs. These new structures are suitable for numerical integration using quadrature formulas based on equallyspaced abscissas, like trapezoidal, Simpson and Romberg integration schemes. 1 Introduction The mechanised verification of a given (usually) finitestate model against a property expressed in some temporal logic is known as model checking. For probabilistic...
Modelling the influence of RKIP on the ERK signalling pathway using the stochastic process algebra PEPA
 Transactions on Computational Systems Biology
, 2004
"... Abstract. This paper examines the influence of the Raf Kinase Inhibitor Protein (RKIP) on the Extracellular signal Regulated Kinase (ERK) signalling pathway [5] through modelling in a Markovian process algebra, PEPA [11]. Two models of the system are presented, a reagentcentric view and a pathwayce ..."
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Cited by 93 (30 self)
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Abstract. This paper examines the influence of the Raf Kinase Inhibitor Protein (RKIP) on the Extracellular signal Regulated Kinase (ERK) signalling pathway [5] through modelling in a Markovian process algebra, PEPA [11]. Two models of the system are presented, a reagentcentric view and a pathwaycentric view. The models capture functionality at the level of subpathway, rather than at a molecular level. Each model affords a different perspective of the pathway and analysis. We demonstrate the two models to be formally equivalent using the timingaware bisimulation defined over PEPA models and discuss the biological significance. 1
Efficient DescriptorVector Multiplications in Stochastic Automata Networks
, 1996
"... This paper examines numerical issues in computing solutions to networks of stochastic automata. It is wellknown that when the matrices that represent the automata contain only constant values, the cost of performing the operation basic to all iterative solution methods, that of matrixvector multi ..."
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Cited by 93 (15 self)
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This paper examines numerical issues in computing solutions to networks of stochastic automata. It is wellknown that when the matrices that represent the automata contain only constant values, the cost of performing the operation basic to all iterative solution methods, that of matrixvector multiply, is given by ae N = N Y i=1 n i \Theta N X i=1 n i ; where n i is the number of states in the i th automaton and N is the number of automata in the network. We introduce the concept of a generalized tensor product and prove a number of lemmas concerning this product. The result of these lemmas allows us to show that this relatively small number of operations is sufficient in many practical cases of interest in which the automata contain functional and not simply constant transitions. Furthermore, we show how the automata should be ordered to achieve this.
Pagerank without hyperlinks: structural reranking using links induced by language models
 In Proceedings of SIGIR
, 2005
"... Inspired by the PageRank and HITS (hubs and authorities) algorithms for Web search, we propose a structural reranking approach to ad hoc information retrieval: we reorder the documents in an initially retrieved set by exploiting asymmetric relationships between them. Specifically, we consider gener ..."
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Cited by 80 (11 self)
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Inspired by the PageRank and HITS (hubs and authorities) algorithms for Web search, we propose a structural reranking approach to ad hoc information retrieval: we reorder the documents in an initially retrieved set by exploiting asymmetric relationships between them. Specifically, we consider generation links, which indicate that the language model induced from one document assigns high probability to the text of another; in doing so, we take care to prevent bias against long documents. We study a number of reranking criteria based on measures of centrality in the graphs formed by generation links, and show that integrating centrality into standard languagemodelbased retrieval is quite effective at improving precision at top ranks.
Model checking continuoustime Markov chains by transient analysis
, 2000
"... . The verification of continuoustime Markov chains (CTMCs) against continuous stochastic logic (CSL) [3, 6], a stochastic branchingtime temporal logic, is considered. CSL facilitates among others the specification of steadystate properties and the specification of probabilistic timing properties o ..."
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Cited by 69 (17 self)
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. The verification of continuoustime Markov chains (CTMCs) against continuous stochastic logic (CSL) [3, 6], a stochastic branchingtime temporal logic, is considered. CSL facilitates among others the specification of steadystate properties and the specification of probabilistic timing properties of the form P# #p(#1 U I #2 ), for state formulas #1 and #2 , comparison operator ##, probability p, and real interval I. The main result of this paper is that model checking probabilistic timing properties can be reduced to the problem of computing transient state probabilities for CTMCs. This allows us to verify such properties by using e#cient techniques for transient analysis of CTMCs such as uniformisation. A second result is that a variant of ordinary lumping equivalence (i.e., bisimulation), a wellknown notion for aggregating CTMCs, preserves the validity of all CSLformulas. In 12th Annual Symposium on Computer Aided Verification, CAV 2000, c # SpringerVerlag 2000 Chicago,...
A survey of eigenvector methods of web information retrieval
 SIAM Rev
"... Abstract. Web information retrieval is significantly more challenging than traditional wellcontrolled, small document collection information retrieval. One main difference between traditional information retrieval and Web information retrieval is the Web’s hyperlink structure. This structure has bee ..."
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Cited by 66 (6 self)
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Abstract. Web information retrieval is significantly more challenging than traditional wellcontrolled, small document collection information retrieval. One main difference between traditional information retrieval and Web information retrieval is the Web’s hyperlink structure. This structure has been exploited by several of today’s leading Web search engines, particularly Google and Teoma. In this survey paper, we focus on Web information retrieval methods that use eigenvector computations, presenting the three popular methods of HITS, PageRank, and SALSA.
Complexity of memoryefficient Kronecker operations with applications to the solution of Markov models
 INFORMS J. Comp
, 2000
"... We present new algorithms for the solution of large structured Markov models whose infinitesimal generator can be expressed as a Kronecker expression of sparse matrices. We then compare them with the shufflebased method commonly used in this context and show how our new algorithms can be advantageo ..."
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Cited by 65 (18 self)
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We present new algorithms for the solution of large structured Markov models whose infinitesimal generator can be expressed as a Kronecker expression of sparse matrices. We then compare them with the shufflebased method commonly used in this context and show how our new algorithms can be advantageous in dealing with very sparse matrices and in supporting both Jacobistyle and GaussSeidelstyle methods with appropriate multiplication algorithms. Our main contribution is to show how solution algorithms based on Kronecker expression can be modified to consider probability vectors of size equal to the "actual" state space instead of the "potential" state space, thus providing space and time savings. The complexity of our algorithms is compared under different sparsity assumptions. A nontrivial example is studied to illustrate the complexity of the implemented algorithms. Continuous time Markov chains (CTMCs) are an established technique to analyze the performance, reliability, or performability of dynamic systems from a wide range of application areas. CTMCs are usually specied in a highlevel modeling formalism, then a software tool is employed to generate the state space and generator matrix of the underlying CTMC and compute the stationary