A large class of systems of biological and technological relevance can be described as analog networks, that is, collections of dynamical devices interconnected by links of varying strength. Some examples of analog networks are genetic regulatory networks, metabolic networks, neural networks, analog electronic circuits, and control systems. Analog networks are typically complex systems which include nonlinear feedback loops and possess temporal dynamics at different time scales. Both the synthesis and reverse engineering of analog networks are recognized as knowledge-intensive activities, for which few systematic techniques exist. In this paper we will discuss the general relevance of the analog network concept and describe an evolutionary approach to the automatic synthesis and the reverse engineering of analog networks. The proposed approach is called analog genetic encoding (AGE) and realizes an implicit genetic encoding of analog networks. AGE permits the evolution of humancompetitive solutions to real-world analog network design and identification problems. This is illustrated by some examples of application to the design of electronic circuits, control systems, learning neural architectures, and the reverse engineering of biological networks.

In biomedical signal analysis, artificial neural networks are often used for pattern classification because of their capability for nonlinear class separation and the possibility to efficiently implement them on a microcontroller. Typically, the network topology is designed by hand, and a gradient-based search algorithm is used to find a set of suitable parameters for the given classification task. In many cases, however, the choice of the network architecture is a critical and difficult task. For example, hand-designed networks often require more computational resources than necessary because they rely on input features that provide no information or are redundant. In the case of mobile applications, where computational resources and energy are limited, this is especially detrimental. Neuroevolutionary methods which allow for the automatic synthesis of network topology and parameters offer a solution to these problems. In this paper, we use analog genetic encoding (AGE) for the evolutionary synthesis of a neural classifier for a mobile sleep/wake discrimination system. The comparison with a hand-designed classifier trained with back propagation shows that the evolved neural classifiers display similar performance to the hand-designed networks, but using a greatly reduced set of inputs, thus reducing computation time and improving the energy efficiency of the mobile system. Copyright © 2009 Peter Dürr et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.