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A Discriminative Model-Constrained Graph Cuts Approach to Fully Automated Pediatric Brain Tumor Segmentation in 3-D MRI
"... Abstract. In this paper we present a fully automated approach to the segmentation of pediatric brain tumors in multi-spectral 3-D magnetic resonance images. It is a top-down segmentation approach based on a Markov random field (MRF) model that combines probabilistic boosting trees (PBT) and lower-le ..."
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Abstract. In this paper we present a fully automated approach to the segmentation of pediatric brain tumors in multi-spectral 3-D magnetic resonance images. It is a top-down segmentation approach based on a Markov random field (MRF) model that combines probabilistic boosting trees (PBT) and lower-level segmentation via graph cuts. The PBT algorithm provides a strong discriminative observation model that classifies tumor appearance while a spatial prior takes into account the pair-wise homogeneity in terms of classification labels and multi-spectral voxel intensities. The discriminative model relies not only on observed local intensities but also on surrounding context for detecting candidate regions for pathology. A mathematically sound formulation for integrating the two approaches into a unified statistical framework is given. The proposed method is applied to the challenging task of detection and delineation of pediatric brain tumors. This segmentation task is characterized by a high non-uniformity of both the pathology and the surrounding non-pathologic brain tissue. A quantitative evaluation illustrates the robustness of the proposed method. Despite dealing with more complicated cases of pediatric brain tumors the results obtained are similar to those reported for current state-of-the-art approaches to 3-D MR brain tumor segmentation in adult patients. Processing one multi-spectral data set takes 5 minutes on average including pre-processing and does not require any user interaction. 1
MRF Labeling with a Graph-Shifts Algorithm
"... Abstract. We present an adaptation of the recently proposed graph-shifts algorithm for labeling MRF problems from low-level vision. Graph-shifts is an energy minimization algorithm that does labeling by dynamically manipulating, or shifting, the parent-child relationships in a hierarchical decomposi ..."
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Abstract. We present an adaptation of the recently proposed graph-shifts algorithm for labeling MRF problems from low-level vision. Graph-shifts is an energy minimization algorithm that does labeling by dynamically manipulating, or shifting, the parent-child relationships in a hierarchical decomposition of the image. Graph-shifts was originally proposed for labeling using relatively small label sets (e.g., 9) for problems in high-level vision. In the low-level vision problems we consider, there are much larger label sets (e.g., 256). However, the original graph-shifts algorithm does not scale well with the number of labels; for example, the memory requirement is quadratic in the number of labels. We propose four improvements to the graph-shifts representation and algorithm that make it suitable for doing labeling on these large label sets. We implement and test the algorithm on two low-level vision problems: image restoration and stereo. Our results demonstrate the potential for such a hierarchical energy minimization algorithm on low-level vision problems with large label sets. 1
Object Boundary Detection and Foreground/Background Segmentation by Integrating Information from Low-level to High-level ∗
"... Object boundary detection and foreground/background segmentation are central problems in computer vision. The importance of combining low-, mid-, and high-level cues has been realized in recent literature. However, it is unclear how to efficiently and effectively engage and fuse different levels of ..."
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Object boundary detection and foreground/background segmentation are central problems in computer vision. The importance of combining low-, mid-, and high-level cues has been realized in recent literature. However, it is unclear how to efficiently and effectively engage and fuse different levels of information. In this paper, we emphasize a learning based approach to explore different levels of information, both implicitly and explicitly. First, we learn lowlevel cues for object boundaries and interior regions using a probabilistic boosting tree (PBT) [33] algorithm. Second, we learn short and long range context information based on the results from the first stage. Both stages implicitly contain object-specific information such as texture and local geometry, and it is shown that this implicit knowledge is extremely powerful. Third, we use high-level shape information explicitly to further refine the object boundary, and this high-level shape information can be further employed to perform the tasks of foreground/background segmentation, object detection, and to parse the object into components. The proposed algorithm is trained and tested on challenging databases of horses [3] and cows [24], and the results obtained are very encouraging compared with other approaches. In detailed experiments we show significantly better performance (e.g. F-values of 0.70 compared to 0.66) than the best comparable reported performance on the horse dataset [27]. Furthermore, the system only needs 1.5 minutes for a typical image. Although our system is illustrated on horse and cow images, the approach can be directly applied to detecting/segmenting/parsing other types of objects.

