Abstract — Social network analysis (SNA) has emerged as a powerful method for understanding the importance of relationships in networks. However, interactive exploration of networks is currently challenging because: (1) it is difficult to find patterns and comprehend the structure of networks with many nodes and links, and (2) current systems are often a medley of statistical methods and overwhelming visual output which leaves many analysts uncertain about how to explore in an orderly manner. This results in exploration that is largely opportunistic. Our contributions are techniques to help structural analysts understand social networks more effectively. We present SocialAction, a system that uses attribute ranking and coordinated views to help users systematically examine numerous SNA measures. Users can (1) flexibly iterate through visualizations of measures to gain an overview, filter nodes, and find outliers, (2) aggregate networks using link structure, find cohesive subgroups, and focus on communities of interest, and (3) untangle networks by viewing different link types separately, or find patterns across different link types using a matrix overview. For each operation, a stable node layout is maintained in the network visualization so users can make comparisons. SocialAction offers analysts a strategy beyond opportunism, as it provides systematic, yet flexible, techniques for exploring social networks. Index Terms—Social networks, interactive graph visualization, attribute ranking, coordinated views, exploratory data analysis. 1

Abstract — MatrixExplorer is a network visualization system that uses two representations: node-link diagrams and matrices. Its design comes from a list of requirements formalized after several interviews and a participatory design session conducted with social science researchers. Although matrices are commonly used in social networks analysis, very few systems support the matrix-based representations to visualize and analyze networks. MatrixExplorer provides several novel features to support the exploration of social networks with a matrix-based representation, in addition to the standard interactive filtering and clustering functions. It provides tools to reorder (layout) matrices, to annotate and compare findings across different layouts and find consensus among several clusterings. MatrixExplorer also supports Node-link diagram views which are familiar to most users and remain a convenient way to publish or communicate exploration results. Matrix and node-link representations are kept synchronized at all stages of the exploration process. Index Terms — social networks visualization, node-link diagrams, matrix-based representations, exploratory process, matrix ordering, interactive clustering, consensus. Fig. 1. MatrixExplorer showing two synchronized representations of the same network: matrix on the left and node-link on the right. 1

The need to visualize large social networks is growing as hardware capabilities make analyzing large networks feasible and many new data sets become available. Unfortunately, the visualizations in existing systems do not satisfactorily resolve the basic dilemma of being readable both for the global structure of the network and also for detailed analysis of local communities. To address this problem, we present NodeTrix, a hybrid representation for networks that combines the advantages of two traditional representations: node-link diagrams are used to show the global structure of a network, while arbitrary portions of the network can be shown as adjacency matrices to better support the analysis of communities. A key contribution is a set of interaction techniques. These allow analysts to create a NodeTrix visualization by dragging selections to and from node-link and matrix forms, and to flexibly manipulate the NodeTrix representation to explore the dataset and create meaningful summary visualizations of their findings. Finally, we present a case study applying NodeTrix to the analysis of the InfoVis 2004 coauthorship dataset to illustrate the capabilities of NodeTrix as both an exploration tool and an effective means of communicating results.

Code duplication or copying a code fragment and then reuse by pasting with or without any modifications is a well known code smell in software maintenance. Several studies show that about 5 % to 20 % of a software systems can contain duplicated code, which is basically the results of copying existing code fragments and using then by pasting with or without minor modifications. One of the major shortcomings of such duplicated fragments is that if a bug is detected in a code fragment, all the other fragments similar to it should be investigated to check the possible existence of the same bug in the similar fragments. Refactoring of the duplicated code is another prime issue in software maintenance although several studies claim that refactoring of certain clones are not desirable and there is a risk of removing them. However, it is also widely agreed that clones should at least be detected. In this paper, we survey the state of the art in clone detection research. First, we describe the clone terms commonly used in the literature along with their corresponding mappings to the commonly used clone types. Second, we provide a review of the existing

We present NodeXL, an extendible toolkit for network overview, discovery and exploration implemented as an add-in to the Microsoft Excel 2007 spreadsheet software. We demonstrate NodeXL data analysis and visualization features with a social media data sample drawn from an enterprise intranet social network. A sequence of NodeXL operations from data import to computation of network statistics and refinement of network visualization through sorting, filtering, and clustering functions is described. These operations reveal sociologically relevant differences in the patterns of interconnection among employee participants in the social media space. The tool and method can be broadly applied.

Visualizing and analyzing social networks is a challenging problem that has been receiving growing attention. An important first step, before analysis can begin, is ensuring that the data is accurate. A common data quality problem is that the data may inadvertently contain several distinct references to the same underlying entity; the process of reconciling these references is called entityresolution. D-Dupe is an interactive tool that combines data mining algorithms for entity resolution with a task-specific network visualization. Users cope with complexity of cleaning large networks by focusing on a small subnetwork containing a potential duplicate pair. The subnetwork highlights relationships in the social network, making the common relationships easy to visually identify. D-Dupe users resolve ambiguities either by merging nodes or by marking them distinct. The entity resolution process is iterative: as pairs of nodes are resolved, additional duplicates may be revealed; therefore, resolution decisions are often chained together. We give examples of how users can flexibly apply sequences of actions to produce a high quality entity resolution result. We illustrate and evaluate the benefits of D-Dupe on three bibliographic collections. Two of the datasets had already been cleaned, and therefore should not have contained duplicates; despite this fact, many duplicates were rapidly identified using D-Dupe’s unique combination of entity resolution algorithms within a task-specific visual interface.

Abstract. Visualizing social networks presents challeges for both nodelink and adjacency matrix representations. Social networks are locally dense, which makes node-link displays unreadable. Yet, main analysis tasks require following paths, which is difficult on matrices. This article presents MatLink, a hybrid representation with links overlaid on the borders of a matrix and dynamic topological feedback as the pointer moves. We evaluated MatLink by an experiment comparing its readability, in term of errors and time, for social network-related tasks to the other conventional representations on graphs varying in size (small and medium) and density. It showed significant advantages for most tasks, especially path-related ones where standard matrices are weak.

Applications supporting navigation in large networks are used every days by millions of people. They include road map navigators, ight route visualization systems, and network visualization systems using node-link diagrams. These applications currently provide generic interaction methods for navigation: pan-and-zoom and sometimes bird’s eye views. This article explores the idea of exploiting the connection information provided by the network to help navigate these large spaces. We visually augment two traditional navigation methods, and develop two special-purpose techniques. The first new technique, called “Link Sliding”, provides guided panning when continuously dragging along a visible link. The second technique, called “Bring & Go”, brings adjacent nodes nearby when pointing to a node. We compare the performance of these techniques in both an adjacency exploration task and a node revisiting task. This comparison illustrates the various advantages of content-aware network navigation techniques. A significant speed advantage is found for the Bring & Go technique over other methods.

Many tools exist for visually exploring biological networks including well-known examples such as Cytoscape, VisANT, Pathway Studio and Patika. These systems play a key role in the development of integrative biology, systems biology and integrative bioinformatics. The trend in the development of these tools is to go beyond “static” representations of cellular state, towards a more dynamic model of cellular processes through the incorporation of gene expression data, subcellular localization information, and time-dependent behavior. We provide a comprehensive review of the relative advantages and disadvantages of existing systems with two goals in mind: to aid researchers in efficiently identifying the appropriate existing tools for data visualization; to describe the necessary and realistic goals for the next generation of visualization tools. In view of the first goal, we provide in the Supplementary Materials a systematic comparison of more than 35 existing tools in terms of over 25 different features.

\begin{quote} Gephi is an open source software for graph and network analysis. It uses a 3D render engine to display large networks in real-time and to speed up the exploration. A flexible and multi-task architecture brings new possibilities to work with complex data sets and produce valuable visual results. We present several key features of Gephi in the context of interactive exploration and interpretation of networks. It provides easy and broad access to network data and allows for spatializing, filtering, navigating, manipulating and clustering. Finally, by presenting dynamic features of Gephi, we highlight key aspects of dynamic network visualization.