Let M be an orientable surface without boundary. A cycle on M is splitting if it has no self-intersections and it partitions M into two components, neither homeomorphic to a disk. In other words, splitting cycles are simple, separating, and non-contractible. We prove that finding the shortest splitting cycle on a combinatorial surface is NP-hard but fixed-parameter tractable with respect to the surface genus. Specifically, we describe an algorithm to compute the shortest splitting cycle in g^O(g) n log n time.

We describe the first algorithms to compute minimum cuts in surface-embedded graphs in nearlinear time. Given an undirected graph embedded on an orientable surface of genus g, with two specified vertices s and t, our algorithm computes a minimum (s, t)-cut in g O(g) n log n time. Except for the special case of planar graphs, for which O(n log n)-time algorithms have been known for more than 20 years, the best previous time bounds for finding minimum cuts in embedded graphs follow from algorithms for general sparse graphs. A slight generalization of our minimum-cut algorithm computes a minimum-cost subgraph in every Z2-homology class. We also prove that finding a minimum-cost subgraph homologous to a single input cycle is NP-hard.

Many applications such as topology repair, model editing, surface parameterization, and feature recognition benefit from computing loops on surfaces that wrap around their ‘handles ’ and ‘tunnels’. Computing such loops while optimizing their geometric lengths is difficult. On the other hand, computing such loops without considering geometry is easy but may not be very useful. In this paper we strike a balance by computing topologically correct loops that are also geometrically relevant. Our algorithm is a novel application of the concepts from topological persistence introduced recently in computational topology. The usability of the computed loops is demonstrated with some examples in feature identification and topology simplification.

A cycle on a combinatorial surface is tight if it as short as possible in its (free) homotopy class. We describe an algorithm to compute a single tight, non-contractible, essentially simple cycle on a given orientable combinatorial surface in O(n log n) time. The only method previously known for this problem was to compute the globally shortest non-contractible or non-separating cycle in O(min{g 3, n} nlog n) time, where g is the genus of the surface. As a consequence, we can compute the shortest cycle freely homotopic to a chosen boundary cycle in O(n log n) time, a tight octagonal decomposition in O(gn log n) time, and a shortest contractible cycle enclosing a non-empty set of faces in O(nlog 2 n) time.

An essential cycle on a surface is a simple cycle that cannot be continuously deformed to a point or a single boundary. We describe algorithms to compute the shortest essential cycle in an orientable combinatorial surface in O(n 2 log n) time, or in O(n log n) time when both the genus and number of boundaries are fixed. Our result corrects an error in a paper of Erickson and Har-Peled.

Inference of topological and geometric attributes of a hidden manifold from its point data is a fundamental problem arising in many scientific studies and engineering applications. In this paper we present an algorithm to compute a set of loops from a point data that presumably sample a smooth manifold M ⊂ R d. These loops approximate a shortest basis of the one dimensional homology group H1(M) over coefficients in finite field Z2. Previous results addressed the issue of computing the rank of the homology groups from point data, but there is no result on approximating the shortest basis of a manifold from its point sample. In arriving our result, we also present a polynomial time algorithm for computing a shortest basis of H1(K) for any finite simplicial complex K whose edges have non-negative weights.

Let G be a directed graph with weighted edges, embedded on a surface of genus g with b boundaries. We describe an algorithm to compute the shortest directed cycle in G in any given � 2-homology class in 2 O(g+b) n log n time; this problem is NP-hard even for undirected graphs. We also present two applications of our algorithm. The first is an algorithm to compute the shortest non-separating directed cycle in G in 2 O(g) n log n time, improving the recent algorithm of Cabello et al. [SOCG 2010] for all g = o(log n). The second is a combinatorial algorithm to compute minimum (s, t)-cuts in undirected surface graphs in 2 O(g) n log n time, improving an algorithm of Chambers et al. [SOCG 2009] for all positive g. Unlike earlier algorithms for surface graphs that construct and search finite portions of the universal cover, our algorithms use another canonical covering space, called the Z 2-homology cover.

Given a simplicial complex with weights on its simplices, and a nontrivial cycle on it, we are interested in finding the cycle with minimal weight which is homologous to the given one. Assuming that the homology is defined with integer (Z) coefficients, we show the following (Theorem 5.2): For a finite simplicial complex K of dimension greater than p, the boundary matrix [∂p+1] is totally unimodular if and only if Hp(L, L0) is torsion-free, for all pure subcomplexes L0, L in K of dimensions p and p + 1 respectively, where L0 ⊂ L. Because of the total unimodularity of the boundary matrix, we can solve the optimization problem, which is inherently an integer programming problem, as a linear program and obtain integer solution. Thus the problem of finding optimal cycles in a given homology class can be solved in polynomial time. This result is surprising in the backdrop of a recent result which says that the problem is NP-hard under Z2 coefficients which, being a field, is in general easier to deal with. One consequence of our result, among others, is that one can compute in polynomial time an optimal 2-cycle in a given homology class for any finite simplicial complex embedded in R 3. Our optimization approach can also be used for various related problems, such as finding an optimal chain homologous to a given one when these are not cycles.

Let G be a directed graph embedded on a surface of genus g. We describe an algorithm to compute the shortest non-separating cycle in G in O(g 2 n log n) time, exactly matching the fastest algorithm known for undirected graphs. We also describe an algorithm to compute the shortest non-contractible cycle in G in g O(g) n log n time, matching the fastest algorithm for undirected graphs of constant genus.

The (Vietoris-)Rips complex of a discrete point-set P is an abstract simplicial complex in which a subset of P defines a simplex if and only if the diameter of that subset is at most 1. We describe an efficient algorithm to determine whether a given cycle in a planar Rips complex is contractible. Our algorithm requires O(m log n) time to preprocess a set of n points in the plane in which m pairs have distance at most 1; after preprocessing, deciding whether a cycle of k Rips edges is contractible requires O(k) time. We also describe an algorithm to compute the shortest non-contractible cycle in a planar Rips complex in O(n 2 log n + mn) time. ∗ See