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129
Markov chains for exploring posterior distributions
- Annals of Statistics
, 1994
"... Your use of the JSTOR archive indicates your acceptance of JSTOR's Terms and Conditions of Use, available at ..."
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Cited by 608 (6 self)
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Your use of the JSTOR archive indicates your acceptance of JSTOR's Terms and Conditions of Use, available at
Markov Logic Networks
- Machine Learning
, 2006
"... Abstract. We propose a simple approach to combining first-order logic and probabilistic graphical models in a single representation. A Markov logic network (MLN) is a first-order knowledge base with a weight attached to each formula (or clause). Together with a set of constants representing objects ..."
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Cited by 363 (27 self)
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Abstract. We propose a simple approach to combining first-order logic and probabilistic graphical models in a single representation. A Markov logic network (MLN) is a first-order knowledge base with a weight attached to each formula (or clause). Together with a set of constants representing objects in the domain, it specifies a ground Markov network containing one feature for each possible grounding of a first-order formula in the KB, with the corresponding weight. Inference in MLNs is performed by MCMC over the minimal subset of the ground network required for answering the query. Weights are efficiently learned from relational databases by iteratively optimizing a pseudo-likelihood measure. Optionally, additional clauses are learned using inductive logic programming techniques. Experiments with a real-world database and knowledge base in a university domain illustrate the promise of this approach.
Simulating Normalizing Constants: From Importance Sampling to Bridge Sampling to Path Sampling
, 1997
"... Computing (ratios of) normalizing constants of probability models is a fundamental computational problem for many statistical and scientific studies. Monte Carlo simulation is an effective technique, especially with complex and high-dimensional models. This paper aims to bring to the attention of ge ..."
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Cited by 106 (2 self)
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Computing (ratios of) normalizing constants of probability models is a fundamental computational problem for many statistical and scientific studies. Monte Carlo simulation is an effective technique, especially with complex and high-dimensional models. This paper aims to bring to the attention of general statistical audiences of some effective methods originating from theoretical physics and at the same time to explore these methods from a more statistical perspective, through establishing theoretical connections and illustrating their uses with statistical problems. We show that the acceptance ratio method and thermodynamic integration are natural generalizations of importance sampling, which is most familiar to statistical audiences. The former generalizes importance sampling through the use of a single "bridge" density and is thus a case of bridge sampling in the sense of Meng and Wong (1996). Thermodynamic integration, which is also known in the numerical analysis literature as Oga...
Markov Chain Monte Carlo Estimation of Exponential Random Graph Models
- Journal of Social Structure
, 2002
"... This paper is about estimating the parameters of the exponential random graph model, also known as the p # model, using frequentist Markov chain Monte Carlo (MCMC) methods. The exponential random graph model is simulated using Gibbs or Metropolis-Hastings sampling. The estimation procedures consider ..."
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Cited by 84 (13 self)
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This paper is about estimating the parameters of the exponential random graph model, also known as the p # model, using frequentist Markov chain Monte Carlo (MCMC) methods. The exponential random graph model is simulated using Gibbs or Metropolis-Hastings sampling. The estimation procedures considered are based on the Robbins-Monro algorithm for approximating a solution to the likelihood equation.
Location-Based Activity Recognition using Relational Markov Networks
"... In this paper we define a general framework for activity recognition by building upon and extending Relational Markov Networks. Using the example of activity recognition from location data, we show that our model can represent a variety of features including temporal information such as time of day, ..."
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Cited by 76 (6 self)
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In this paper we define a general framework for activity recognition by building upon and extending Relational Markov Networks. Using the example of activity recognition from location data, we show that our model can represent a variety of features including temporal information such as time of day, spatial information extracted from geographic databases, and global constraints such as the number of homes or workplaces of a person. We develop an efficient inference and learning technique based on MCMC. Using GPS location data collected by multiple people we show that the technique can accurately label a person’s activity locations. Furthermore, we show that it is possible to learn good models from less data by using priors extracted from other people’s data.
Simulating ratios of normalizing constants via a simple identity: A theoretical exploration
- Statistica Sinica
, 1996
"... Abstract: Let pi(w),i =1, 2, be two densities with common support where each density is known up to a normalizing constant: pi(w) =qi(w)/ci. We have draws from each density (e.g., via Markov chain Monte Carlo), and we want to use these draws to simulate the ratio of the normalizing constants, c1/c2. ..."
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Cited by 76 (3 self)
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Abstract: Let pi(w),i =1, 2, be two densities with common support where each density is known up to a normalizing constant: pi(w) =qi(w)/ci. We have draws from each density (e.g., via Markov chain Monte Carlo), and we want to use these draws to simulate the ratio of the normalizing constants, c1/c2. Such a computational problem is often encountered in likelihood and Bayesian inference, and arises in fields such as physics and genetics. Many methods proposed in statistical and other literature (e.g., computational physics) for dealing with this problem are based on various special cases of the following simple identity: c1 c2 = E2[q1(w)α(w)] E1[q2(w)α(w)]. Here Ei denotes the expectation with respect to pi (i =1, 2), and α is an arbitrary function such that the denominator is non-zero. A main purpose of this paper is to provide a theoretical study of the usefulness of this identity, with focus on (asymptotically) optimal and practical choices of α. Using a simple but informative example, we demonstrate that with sensible (not necessarily optimal) choices of α, we can reduce the simulation error by orders of magnitude when compared to the conventional importance sampling method, which corresponds to α =1/q2. We also introduce several generalizations of this identity for handling more complicated settings (e.g., estimating several ratios simultaneously) and pose several open problems that appear to have practical as well as theoretical value. Furthermore, we discuss related theoretical and empirical work.
Learning Physics-Based Motion Style with Nonlinear Inverse Optimization
- ACM Trans. Graph
, 2005
"... This paper presents a novel physics-based representation of realistic character motion. The dynamical model incorporates several factors of locomotion derived from the biomechanical literature, including relative preferences for using some muscles more than others, elastic mechanisms at joints due t ..."
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Cited by 76 (13 self)
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This paper presents a novel physics-based representation of realistic character motion. The dynamical model incorporates several factors of locomotion derived from the biomechanical literature, including relative preferences for using some muscles more than others, elastic mechanisms at joints due to the mechanical properties of tendons, ligaments, and muscles, and variable stiffness at joints depending on the task. When used in a spacetime optimization framework, the parameters of this model define a wide range of styles of natural human movement.
Regeneration in Markov Chain Samplers
, 1994
"... Markov chain sampling has received considerable attention in the recent literature, in particular in the context of Bayesian computation and maximum likelihood estimation. This paper discusses the use of Markov chain splitting, originally developed as a tool for the theoretical analysis of general s ..."
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Cited by 73 (5 self)
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Markov chain sampling has received considerable attention in the recent literature, in particular in the context of Bayesian computation and maximum likelihood estimation. This paper discusses the use of Markov chain splitting, originally developed as a tool for the theoretical analysis of general state space Markov chains, to introduce regeneration times into Markov chain samplers. This allows the use of regenerative methods for analyzing the output of these samplers, and can also provide a useful diagnostic of the performance of the samplers. The general approach is applied to several different samplers and is illustrated in a number of examples. 1 Introduction In Markov chain Monte Carlo, a distribution ß is examined by obtaining sample paths from a Markov chain constructed to have equilibrium distribution ß. This approach was introduced by Metropolis et al. (1953) and has recently received considerable attention as a method for examining posterior distributions in Bayesian infer...
On the Convergence of Monte Carlo Maximum Likelihood Calculations
- Journal of the Royal Statistical Society B
, 1992
"... Monte Carlo maximum likelihood for normalized families of distributions (Geyer and Thompson, 1992) can be used for an extremely broad class of models. Given any family f h ` : ` 2 \Theta g of nonnegative integrable functions, maximum likelihood estimates in the family obtained by normalizing the the ..."
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Cited by 49 (2 self)
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Monte Carlo maximum likelihood for normalized families of distributions (Geyer and Thompson, 1992) can be used for an extremely broad class of models. Given any family f h ` : ` 2 \Theta g of nonnegative integrable functions, maximum likelihood estimates in the family obtained by normalizing the the functions to integrate to one can be approximated by Monte Carlo, the only regularity conditions being a compactification of the parameter space such that the the evaluation maps ` 7! h ` (x) remain continuous. Then with probability one the Monte Carlo approximant to the log likelihood hypoconverges to the exact log likelihood, its maximizer converges to the exact maximum likelihood estimate, approximations to profile likelihoods hypoconverge to the exact profile, and level sets of the approximate likelihood (support regions) converge to the exact sets (in Painlev'e-Kuratowski set convergence). The same results hold when there are missing data (Thompson and Guo, 1991, Gelfand and Carlin, 19...
Assessing Degeneracy in Statistical Models of Social Networks
- Journal of the American Statistical Association
, 2003
"... discussions. This paper presents recent advances in the statistical modeling of random graphs that have an impact on the empirical study of social networks. Statistical exponential family models (Wasserman and Pattison 1996) are a generalization of the Markov random graph models introduced by Frank ..."
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Cited by 45 (12 self)
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discussions. This paper presents recent advances in the statistical modeling of random graphs that have an impact on the empirical study of social networks. Statistical exponential family models (Wasserman and Pattison 1996) are a generalization of the Markov random graph models introduced by Frank and Strauss (1986), which in turn are derived from developments in spatial statistics (Besag 1974). These models recognize the complex dependencies within relational data structures. A major barrier to the application of random graph models to social networks has been the lack of a sound statistical theory to evaluate model fit. This problem has at least three aspects: the specification of realistic models, the algorithmic difficulties of the inferential methods, and the assessment of the degree to which the graph structure produced by the models matches that of the data. We discuss these and related issues of the model degeneracy and inferential degeneracy for commonly used estimators.

