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154
The structure and function of complex networks
 SIAM REVIEW
, 2003
"... Inspired by empirical studies of networked systems such as the Internet, social networks, and biological networks, researchers have in recent years developed a variety of techniques and models to help us understand or predict the behavior of these systems. Here we review developments in this field, ..."
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Cited by 1396 (9 self)
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Inspired by empirical studies of networked systems such as the Internet, social networks, and biological networks, researchers have in recent years developed a variety of techniques and models to help us understand or predict the behavior of these systems. Here we review developments in this field, including such concepts as the smallworld effect, degree distributions, clustering, network correlations, random graph models, models of network growth and preferential attachment, and dynamical processes taking place on networks.
Mixed membership stochastic block models for relational data with application to proteinprotein interactions
 In Proceedings of the International Biometrics Society Annual Meeting
, 2006
"... We develop a model for examining data that consists of pairwise measurements, for example, presence or absence of links between pairs of objects. Examples include protein interactions and gene regulatory networks, collections of authorrecipient email, and social networks. Analyzing such data with p ..."
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Cited by 174 (31 self)
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We develop a model for examining data that consists of pairwise measurements, for example, presence or absence of links between pairs of objects. Examples include protein interactions and gene regulatory networks, collections of authorrecipient email, and social networks. Analyzing such data with probabilistic models requires special assumptions, since the usual independence or exchangeability assumptions no longer hold. We introduce a class of latent variable models for pairwise measurements: mixed membership stochastic blockmodels. Models in this class combine a global model of dense patches of connectivity (blockmodel) and a local model to instantiate nodespecific variability in the connections (mixed membership). We develop a general variational inference algorithm for fast approximate posterior inference. We demonstrate the advantages of mixed membership stochastic blockmodels with applications to social networks and protein interaction networks.
Pajek  analysis and visualization of large networks
 GRAPH DRAWING SOFTWARE
, 2003
"... Pajek is a program, for Windows, for analysis and visualization of large networks having some ten or houndred of thousands of vertices. In Slovenian language pajek means spider. ..."
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Cited by 121 (3 self)
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Pajek is a program, for Windows, for analysis and visualization of large networks having some ten or houndred of thousands of vertices. In Slovenian language pajek means spider.
Link prediction in relational data
 in Neural Information Processing Systems
, 2003
"... Many realworld domains are relational in nature, consisting of a set of objects related to each other in complex ways. This paper focuses on predicting the existence and the type of links between entities in such domains. We apply the relational Markov network framework of Taskar et al. to define a ..."
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Cited by 107 (1 self)
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Many realworld domains are relational in nature, consisting of a set of objects related to each other in complex ways. This paper focuses on predicting the existence and the type of links between entities in such domains. We apply the relational Markov network framework of Taskar et al. to define a joint probabilistic model over the entire link graph — entity attributes and links. The application of the RMN algorithm to this task requires the definition of probabilistic patterns over subgraph structures. We apply this method to two new relational datasets, one involving university webpages, and the other a social network. We show that the collective classification approach of RMNs, and the introduction of subgraph patterns over link labels, provide significant improvements in accuracy over flat classification, which attempts to predict each link in isolation. 1
Markov Chain Monte Carlo Estimation of Exponential Random Graph Models
 Journal of Social Structure
, 2002
"... This paper is about estimating the parameters of the exponential random graph model, also known as the p # model, using frequentist Markov chain Monte Carlo (MCMC) methods. The exponential random graph model is simulated using Gibbs or MetropolisHastings sampling. The estimation procedures consider ..."
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Cited by 104 (15 self)
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This paper is about estimating the parameters of the exponential random graph model, also known as the p # model, using frequentist Markov chain Monte Carlo (MCMC) methods. The exponential random graph model is simulated using Gibbs or MetropolisHastings sampling. The estimation procedures considered are based on the RobbinsMonro algorithm for approximating a solution to the likelihood equation.
Microscopic Evolution of Social Networks
, 2008
"... We present a detailed study of network evolution by analyzing four large online social networks with full temporal information about node and edge arrivals. For the first time at such a large scale, we study individual node arrival and edge creation processes that collectively lead to macroscopic pr ..."
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Cited by 103 (5 self)
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We present a detailed study of network evolution by analyzing four large online social networks with full temporal information about node and edge arrivals. For the first time at such a large scale, we study individual node arrival and edge creation processes that collectively lead to macroscopic properties of networks. Using a methodology based on the maximumlikelihood principle, we investigate a wide variety of network formation strategies, and show that edge locality plays a critical role in evolution of networks. Our findings supplement earlier network models based on the inherently nonlocal preferential attachment. Based on our observations, we develop a complete model of network evolution, where nodes arrive at a prespecified rate and select their lifetimes. Each node then independently initiates edges according to a “gap” process, selecting a destination for each edge according to a simple triangleclosing model free of any parameters. We show analytically that the combination of the gap distribution with the node lifetime leads to a power law outdegree distribution that accurately reflects the true network in all four cases. Finally, we give model parameter settings that allow automatic evolution and generation of realistic synthetic networks of arbitrary scale.
New specifications for exponential random graph models
, 2004
"... The most promising class of statistical models for expressing structural properties of social networks observed at one moment in time, is the class of Exponential Random Graph Models (ERGMs), also known as p ∗ models. The strong point of these models is that they can represent a variety of structura ..."
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Cited by 80 (16 self)
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The most promising class of statistical models for expressing structural properties of social networks observed at one moment in time, is the class of Exponential Random Graph Models (ERGMs), also known as p ∗ models. The strong point of these models is that they can represent a variety of structural tendencies, such as transitivity, that define complicated dependence patterns not easily modeled by more basic probability models. Recently, MCMC algorithms have been developed which produce approximate Maximum Likelihood estimators. Applying these models in their traditional specification to observed network data often has led to problems, however, which can be traced back to the fact that important parts of the parameter space correspond to nearly degenerate distributions, which may lead to convergence problems of estimation algorithms, and a poor fit to empirical data. This paper proposes new specifications of Exponential Random Graph Models. These specifications represent structural properties such as transitivity and heterogeneity of degrees by more complicated graph statistics than the traditional star and triangle counts. Three kinds of statistic are proposed: geometrically weighted degree distributions, alternating ktriangles, and alternating independent twopaths. Examples are presented both of modeling graphs and digraphs, in which the new specifications lead to much better results than the earlier existing specifications of the ERGM. It is concluded that the new specifications increase the range and applicability of the ERGM as a tool for the statistical analysis of social networks.
Assessing Degeneracy in Statistical Models of Social Networks
 Journal of the American Statistical Association
, 2003
"... discussions. This paper presents recent advances in the statistical modeling of random graphs that have an impact on the empirical study of social networks. Statistical exponential family models (Wasserman and Pattison 1996) are a generalization of the Markov random graph models introduced by Frank ..."
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Cited by 55 (14 self)
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discussions. This paper presents recent advances in the statistical modeling of random graphs that have an impact on the empirical study of social networks. Statistical exponential family models (Wasserman and Pattison 1996) are a generalization of the Markov random graph models introduced by Frank and Strauss (1986), which in turn are derived from developments in spatial statistics (Besag 1974). These models recognize the complex dependencies within relational data structures. A major barrier to the application of random graph models to social networks has been the lack of a sound statistical theory to evaluate model fit. This problem has at least three aspects: the specification of realistic models, the algorithmic difficulties of the inferential methods, and the assessment of the degree to which the graph structure produced by the models matches that of the data. We discuss these and related issues of the model degeneracy and inferential degeneracy for commonly used estimators.