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Genic Representation: Reconciling Content and Causal Complexity
"... this paper we investigate the claim that complex causal interactions cause trouble for the notion of inner representational vehicles. We review some of the cases supposed to put pressure on a representational-vehicle based understanding and conclude that the threat, even in these ongoing, interactiv ..."
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Cited by 16 (1 self)
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this paper we investigate the claim that complex causal interactions cause trouble for the notion of inner representational vehicles. We review some of the cases supposed to put pressure on a representational-vehicle based understanding and conclude that the threat, even in these ongoing, interactive cases, is more apparent than real. The main contribution of the present paper, however, is to go beyond this negative thesis
Biologically Motivated Distributed Design for Adaptive Knowledge Management
- DESIGN PRINCIPLES FOR THE IMMUNE SYSTEM AND OTHER DISTRIBUTED AUTONOMOUS SYSTEMS
, 2000
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Evolution with material symbol systems
- Biosystems
, 2001
"... Pattee's semantic closure principle is used to study the characteristics and requirements of evolving material symbols systems. By contrasting agents that reproduce via genetic variation with agents that reproduce via self-inspection, we reach the conclusion that symbols are necessary to attain open ..."
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Cited by 11 (1 self)
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Pattee's semantic closure principle is used to study the characteristics and requirements of evolving material symbols systems. By contrasting agents that reproduce via genetic variation with agents that reproduce via self-inspection, we reach the conclusion that symbols are necessary to attain open-ended evolution, but only if the phenotypes of agents are the result of a material, selforganization process. This way, a study of the inter-dependencies of symbol and matter is presented. This study is based first on a theoretical treatment of symbolic representations, and secondly on simulations of simple agents with matter-symbol inter-dependencies. The agent-based simulations use evolutionary algorithms with indirectly encoded phenotypes. The indirect encoding is based on Fuzzy Development programs, which are procedures for combining fuzzy sets in such a way as to model self-organizing development processes.
Adaptive Recommendation and Open-Ended Semiosis
"... ... in distributed information systems is proposed. This system is both a model of dynamic cognitive categorization processes and powerful real application useful for knowledge management. It utilizes an extension of fuzzy sets named evidence sets as the mathematical mechanisms to implement the cate ..."
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Cited by 8 (7 self)
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... in distributed information systems is proposed. This system is both a model of dynamic cognitive categorization processes and powerful real application useful for knowledge management. It utilizes an extension of fuzzy sets named evidence sets as the mathematical mechanisms to implement the categorization processes. It is a development of some aspects of Pask’s Conversation Theory. It is also an instance of the notion of linguistic-based selected self-organization here described, and as such it instantiates an open-ended semiosis between distributed information systems and the communities of users they interact with. This means that the knowledge stored in distributed information resources adapts to the evolving semantic expectations of their users as these select the information they desire in conversation with the information resources. This way, this recommendation system establishes a mechanism for user-driven knowledge self-organization.
Syntactic autonomy: Or why there is no autonomy without symbols and how selforganizing systems might evolve them
- Annals of the New York Academy of Science
"... Two different types of agency are discussed based on dynamically coherent and incoherent couplings with an environment respectively. I propose that until a private syntax (syntactic autonomy) is discovered by dynamically coherent agents, there are no significant or interesting types of closure or au ..."
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Cited by 7 (4 self)
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Two different types of agency are discussed based on dynamically coherent and incoherent couplings with an environment respectively. I propose that until a private syntax (syntactic autonomy) is discovered by dynamically coherent agents, there are no significant or interesting types of closure or autonomy. When syntactic autonomy is established, then, because of a process of description-based selected self-organization, open-ended evolution is enabled. At this stage, agents depend, in addition to dynamics, on localized, symbolic memory, thus adding a level of dynamical incoherence to their interaction with the environment. Furthermore, it is the appearance of syntactic autonomy which enables much more interesting types of closures amongst agents which share the same syntax. To investigate how we can study the emergence of syntax from dynamical systems, experiments with cellular automata leading to emergent computation to solve non-trivial tasks are discussed. RNA editing is also mentioned as a process that may have been used to obtain a primordial biological code necessary open-ended evolution.
PD. Encoding a post-operative coronary artery bypass surgery care plan
- in the Arden Syntax. Comput. Biol. Med. 1994;24(5):411
, 2004
"... Abstract We present a new definition of the concept of representation for cognitive science that is based on a study of the origin of structures that are used to store memory in evolving systems. This study consists of novel computer experiments in the evolution of cellular automata to perform nontr ..."
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Cited by 7 (2 self)
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Abstract We present a new definition of the concept of representation for cognitive science that is based on a study of the origin of structures that are used to store memory in evolving systems. This study consists of novel computer experiments in the evolution of cellular automata to perform nontrivial tasks as well as evidence from biology concerning genetic memory. Our key observation is that representations require inert structures to encode information used to construct appropriate dynamic configurations for the evolving system. We propose criteria to decide if a given structure is a representation by unpacking the idea of inert structures that can be used as memory for arbitrary dynamic configurations. Using a genetic algorithm, we evolved cellular automata rules that can perform nontrivial tasks related to the density task (or majority classification problem) commonly used in the literature. We present the particle catalogs of the new rules following the computational mechanics framework. We discuss if the evolved cellular automata particles may be seen as representations according to our criteria. We show that while they capture some of the essential characteristics of representations, they lack an essential one. Our goal is to show that artificial life can be used to shed new light on the computation-versus-dynamics debate in cognitive science, and indeed function as a constructive bridge between the two camps. Our definitions of representation and cellular automata experiments are proposed as a complementary approach, with both dynamics and informational modes of explanation.
Syntactic autonomy
- In: Proceedings of the Joint Conference on the Science and Technology of Intelligent Systems (ISIC/CIRA/ISAS 98). National Institute of Standards and Technology, Gaithersbutg, MD
, 1998
"... The study of adapting and evolving autonomous agents should be based on a complex systems-theoretic framework which requires both self-organizing and symbolic dimensions. An inclusive framework based on the notions of semiotics and situated action is advanced to build models capable of representing, ..."
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Cited by 6 (5 self)
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The study of adapting and evolving autonomous agents should be based on a complex systems-theoretic framework which requires both self-organizing and symbolic dimensions. An inclusive framework based on the notions of semiotics and situated action is advanced to build models capable of representing, as well as evolving in their environments. Such undertaking is pursued by discussing the ways in which symbol and self-organization are irreducibly intertwined in evolutionary systems. This way, we re-think the notion of autonomy of evolving systems, and show that evolutionary systems are characterized by a particular type of syntactic autonomy. Recent developments in emergent computation in cellular automata are discussed as examples of the emergence of syntactic autonomy in computational environments. New results emphasizing this syntactic autonomy in cellular automata are presented.
Symbols and dynamics in the brain
- BIOSYSTEMS SPECIAL ISSUE ON “PHYSICS AND EVOLUTION OF SYMBOLS AND CODES”
, 2001
"... The work of physicist and theoretical biologist Howard Pattee has focused on the roles that symbols and dynamics play in biological systems. Symbols, as discrete functional switching-states, are seen at the heart of all biological systems in form of genetic codes, and at the core of all neural syste ..."
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Cited by 5 (2 self)
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The work of physicist and theoretical biologist Howard Pattee has focused on the roles that symbols and dynamics play in biological systems. Symbols, as discrete functional switching-states, are seen at the heart of all biological systems in form of genetic codes, and at the core of all neural systems in the form of informational mechanisms that switch behavior. They also appear in one form or another in all epistemic systems, from informational processes embedded in primitive organisms to individual human beings to public scientific models. Over its course, Pattee’s work has explored 1) the physical basis of informational functions (dynamical vs. rule-based descriptions, switching mechanisms, memory, symbols), 2) the functional organization of the observer (measurement, computation), 3) the means by which information can be embedded in biological organisms for purposes of self-construction and representation (as codes, modeling relations, memory, symbols), and 4) the processes by which new structures and functions can emerge over time. We discuss how these concepts can be applied to a high-level understanding of the brain. Biological organisms constantly
Evolution of recollection and prediction in neural networks
- In Proceedings of the International Joint Conference on Neural Networks
, 2009
"... Abstract — A large number of neural network models are based on a feedforward topology (perceptrons, backpropagation networks, radial basis functions, support vector machines, etc.), thus lacking dynamics. In such networks, the order of input presentation is meaningless (i.e., it does not affect the ..."
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Cited by 4 (4 self)
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Abstract — A large number of neural network models are based on a feedforward topology (perceptrons, backpropagation networks, radial basis functions, support vector machines, etc.), thus lacking dynamics. In such networks, the order of input presentation is meaningless (i.e., it does not affect the behavior) since the behavior is largely reactive. That is, such neural networks can only operate in the present, having no access to the past or the future. However, biological neural networks are mostly constructed with a recurrent topology, and recurrent (artificial) neural network models are able to exhibit rich temporal dynamics, thus time becomes an essential factor in their operation. In this paper, we will investigate the emergence of recollection and prediction in evolving neural networks. First, we will show how reactive, feedforward networks can evolve a memory-like function (recollection) through utilizing external markers dropped and detected in the environment. Second, we will investigate how recurrent networks with more predictable internal state trajectory can emerge as an eventual winner in evolutionary struggle when competing networks with less predictable trajectory show the same level of behavioral performance. We expect our results to help us better understand the evolutionary origin of recollection and prediction in neuronal networks, and better appreciate the role of time in brain function. I.
Motor system’s role in grounding, receptive field development, and shape recognition
- in Proceedings of the Seventh International Conference on Development and Learning
, 2008
"... Abstract—Vision is basically a sensory modality, so it is no surprise that the investigation into the brain’s visual functions has been focused on its sensory aspect. Thus, questions like (1) how can external geometric properties represented in internal states of the visual system be grounded, (2) h ..."
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Cited by 3 (1 self)
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Abstract—Vision is basically a sensory modality, so it is no surprise that the investigation into the brain’s visual functions has been focused on its sensory aspect. Thus, questions like (1) how can external geometric properties represented in internal states of the visual system be grounded, (2) how do the visual cortical receptive fields (RFs) form, and (3) how can visual shapes be recognized have all been addressed within the framework of sensory information processing. However, this view is being challenged on multiple fronts, with an increasing emphasis on the motor aspect of visual function. In this paper, we will review works that implicate the important role of motor function in vision, and discuss our latest results touching upon the issues of grounding, RF development, and shape recognition. Our main findings are that (1) motor primitives play a fundamental role in grounding, (2) RF learning can be biased and enhanced by the motor system, and (3) shape recognition is easier with motorbased representations than with sensor-based representations. The insights we gained here will help us better understand visual cortical function. Also, we expect the motor-oriented view of visual cortical function to be generalizable to other sensory cortices such as somatosensory and auditory cortices. I.

