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Markov chains for exploring posterior distributions,” Annals of Statistics (1994)

by L Tierney
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Non-Uniform Random Variate Generation

by Luc Devroye , 1986
"... Abstract. This chapter provides a survey of the main methods in non-uniform random variate generation, and highlights recent research on the subject. Classical paradigms such as inversion, rejection, guide tables, and transformations are reviewed. We provide information on the expected time complexi ..."
Abstract - Cited by 476 (19 self) - Add to MetaCart
Abstract. This chapter provides a survey of the main methods in non-uniform random variate generation, and highlights recent research on the subject. Classical paradigms such as inversion, rejection, guide tables, and transformations are reviewed. We provide information on the expected time complexity of various algorithms, before addressing modern topics such as indirectly specified distributions, random processes, and Markov chain methods.

Sequential Monte Carlo Methods for Dynamic Systems

by Jun S. Liu, Rong Chen - Journal of the American Statistical Association , 1998
"... A general framework for using Monte Carlo methods in dynamic systems is provided and its wide applications indicated. Under this framework, several currently available techniques are studied and generalized to accommodate more complex features. All of these methods are partial combinations of three ..."
Abstract - Cited by 340 (4 self) - Add to MetaCart
A general framework for using Monte Carlo methods in dynamic systems is provided and its wide applications indicated. Under this framework, several currently available techniques are studied and generalized to accommodate more complex features. All of these methods are partial combinations of three ingredients: importance sampling and resampling, rejection sampling, and Markov chain iterations. We deliver a guideline on how they should be used and under what circumstance each method is most suitable. Through the analysis of differences and connections, we consolidate these methods into a generic algorithm by combining desirable features. In addition, we propose a general use of Rao-Blackwellization to improve performances. Examples from econometrics and engineering are presented to demonstrate the importance of Rao-Blackwellization and to compare different Monte Carlo procedures. Keywords: Blind deconvolution; Bootstrap filter; Gibbs sampling; Hidden Markov model; Kalman filter; Markov...

On Bayesian analysis of mixtures with an unknown number of components

by Sylvia Richardson, Peter J. Green - INSTITUTE OF INTERNATIONAL ECONOMICS PROJECT ON INTERNATIONAL COMPETITION POLICY," COM/DAFFE/CLP/TD(94)42 , 1997
"... ..."
Abstract - Cited by 325 (16 self) - Add to MetaCart
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Bayesian Analysis of Stochastic Volatility Models

by Eric Jacquier, Nicholas G. Polson, Peter E. Rossi , 1994
"... this article is to develop new methods for inference and prediction in a simple class of stochastic volatility models in which logarithm of conditional volatility follows an autoregressive (AR) times series model. Unlike the autoregressive conditional heteroscedasticity (ARCH) and gener- alized ARCH ..."
Abstract - Cited by 267 (12 self) - Add to MetaCart
this article is to develop new methods for inference and prediction in a simple class of stochastic volatility models in which logarithm of conditional volatility follows an autoregressive (AR) times series model. Unlike the autoregressive conditional heteroscedasticity (ARCH) and gener- alized ARCH (GARCH) models [see Bollerslev, Chou, and Kroner (1992) for a survey of ARCH modeling], both the mean and log-volatility equations have separate error terms. The ease of evaluating the ARCH likelihood function and the ability of the ARCH specification to accommodate the timevarying volatility found in many economic time series has fostered an explosion in the use of ARCH models. On the other hand, the likelihood function for stochastic volatility models is difficult to evaluate, and hence these models have had limited empirical application

Stochastic Volatility: Likelihood Inference And Comparison With Arch Models

by Sangjoon Kim, Neil Shephard , 1994
"... this paper we exploit Gibbs sampling to provide a likelihood framework for the analysis of stochastic volatility models, demonstrating how to perform either maximum likelihood or Bayesian estimation. The paper includes an extensive Monte Carlo experiment which compares the efficiency of the maximum ..."
Abstract - Cited by 246 (31 self) - Add to MetaCart
this paper we exploit Gibbs sampling to provide a likelihood framework for the analysis of stochastic volatility models, demonstrating how to perform either maximum likelihood or Bayesian estimation. The paper includes an extensive Monte Carlo experiment which compares the efficiency of the maximum likelihood estimator with that of quasi-likelihood and Bayesian estimators proposed in the literature. We also compare the fit of the stochastic volatility model to that of ARCH models using the likelihood criterion to illustrate the flexibility of the framework presented. Some key words: ARCH, Bayes estimation, Gibbs sampler, Heteroscedasticity, Maximum likelihood, Quasi-maximum likelihood, Simulation, Stochastic EM algorithm, Stochastic volatility, Stock returns. 1 INTRODUCTION

Markov Chain Monte Carlo Convergence Diagnostics: A Comparative Review

by Mary Kathryn Cowles, Bradley P. Carlin - Journal of the American Statistical Association , 1996
"... A critical issue for users of Markov Chain Monte Carlo (MCMC) methods in applications is how to determine when it is safe to stop sampling and use the samples to estimate characteristics of the distribution of interest. Research into methods of computing theoretical convergence bounds holds promise ..."
Abstract - Cited by 161 (5 self) - Add to MetaCart
A critical issue for users of Markov Chain Monte Carlo (MCMC) methods in applications is how to determine when it is safe to stop sampling and use the samples to estimate characteristics of the distribution of interest. Research into methods of computing theoretical convergence bounds holds promise for the future but currently has yielded relatively little that is of practical use in applied work. Consequently, most MCMC users address the convergence problem by applying diagnostic tools to the output produced by running their samplers. After giving a brief overview of the area, we provide an expository review of thirteen convergence diagnostics, describing the theoretical basis and practical implementation of each. We then compare their performance in two simple models and conclude that all the methods can fail to detect the sorts of convergence failure they were designed to identify. We thus recommend a combination of strategies aimed at evaluating and accelerating MCMC sampler conver...

An Introduction to MCMC for Machine Learning

by Christophe Andrieu , 2003
"... This purpose of this introductory paper is threefold. First, it introduces the Monte Carlo method with emphasis on probabilistic machine learning. Second, it reviews the main building blocks of modern Markov chain Monte Carlo simulation, thereby providing and introduction to the remaining papers of ..."
Abstract - Cited by 141 (2 self) - Add to MetaCart
This purpose of this introductory paper is threefold. First, it introduces the Monte Carlo method with emphasis on probabilistic machine learning. Second, it reviews the main building blocks of modern Markov chain Monte Carlo simulation, thereby providing and introduction to the remaining papers of this special issue. Lastly, it discusses new interesting research horizons.

Using simulation methods for Bayesian econometric models: Inference, development and communication

by John Geweke - Econometric Review , 1999
"... This paper surveys the fundamental principles of subjective Bayesian inference in econometrics and the implementation of those principles using posterior simulation methods. The emphasis is on the combination of models and the development of predictive distributions. Moving beyond conditioning on a ..."
Abstract - Cited by 113 (15 self) - Add to MetaCart
This paper surveys the fundamental principles of subjective Bayesian inference in econometrics and the implementation of those principles using posterior simulation methods. The emphasis is on the combination of models and the development of predictive distributions. Moving beyond conditioning on a fixed number of completely specified models, the paper introduces subjective Bayesian tools for formal comparison of these models with as yet incompletely specified models. The paper then shows how posterior simulators can facilitate communication between investigators (for example, econometricians) on the one hand and remote clients (for example, decision makers) on the other, enabling clients to vary the prior distributions and functions of interest employed by investigators. A theme of the paper is the practicality of subjective Bayesian methods. To this end, the paper describes publicly available software for Bayesian inference, model development, and communication and provides illustrations using two simple econometric models. *This paper was originally prepared for the Australasian meetings of the Econometric Society in Melbourne, Australia,

Multiple Shrinkage and Subset Selection in Wavelets

by Merlise Clyde, Giovanni Parmigiani, Brani Vidakovic , 1997
"... This paper discusses Bayesian methods for multiple shrinkage estimation in wavelets. Wavelets are used in applications for data denoising, via shrinkage of the coefficients towards zero, and for data compression, by shrinkage and setting small coefficients to zero. We approach wavelet shrinkage by u ..."
Abstract - Cited by 91 (16 self) - Add to MetaCart
This paper discusses Bayesian methods for multiple shrinkage estimation in wavelets. Wavelets are used in applications for data denoising, via shrinkage of the coefficients towards zero, and for data compression, by shrinkage and setting small coefficients to zero. We approach wavelet shrinkage by using Bayesian hierarchical models, assigning a positive prior probability to the wavelet coefficients being zero. The resulting estimator for the wavelet coefficients is a multiple shrinkage estimator that exhibits a wide variety of nonlinear shrinkage patterns. We discuss fast computational implementations, with a focus on easy-to-compute analytic approximations as well as importance sampling and Markov chain Monte Carlo methods. Multiple shrinkage estimators prove to have excellent mean squared error performance in reconstructing standard test functions. We demonstrate this in simulated test examples, comparing various implementations of multiple shrinkage to commonly used shrinkage rules. Finally, we illustrate our approach with an application to the so-called "glint" data.

Practical Bayesian Density Estimation Using Mixtures Of Normals

by Kathryn Roeder, Larry Wasserman - Journal of the American Statistical Association , 1995
"... this paper, we propose some solutions to these problems. Our goal is to come up with a simple, practical method for estimating the density. This is an interesting problem in its own right, as well as a first step towards solving other inference problems, such as providing more flexible distributions ..."
Abstract - Cited by 88 (2 self) - Add to MetaCart
this paper, we propose some solutions to these problems. Our goal is to come up with a simple, practical method for estimating the density. This is an interesting problem in its own right, as well as a first step towards solving other inference problems, such as providing more flexible distributions in hierarchical models. To see why the posterior is improper under the usual reference prior, we write the model in the following way. Let Z = (Z 1 ; : : : ; Z n ) and X = (X 1 ; : : : ; X n ). The Z
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