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A Parallel File I/O Interface for MPI (1996)

by MPI-IO Committee
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Virtual Memory Versus File Interfaces for Large, Memory-Intensive Scientific Applications

by Yoonho Park, Ridgway Scott, Stuart Sechrest - In Proceedings of the Conference on Supercomputing , 1996
"... Scientific applications often require some strategy for temporary data storage to do the largest possible simulations. The use of virtual memory for temporary data storage has received criticism because of performance problems. However, modern virtual memory found in recent operating systems such as ..."
Abstract - Cited by 9 (1 self) - Add to MetaCart
Scientific applications often require some strategy for temporary data storage to do the largest possible simulations. The use of virtual memory for temporary data storage has received criticism because of performance problems. However, modern virtual memory found in recent operating systems such as Cenju-3/DE give application writers control over virtual memory policies. We demonstrate that custom virtual memory policies can dramatically reduce virtual memory overhead and allow applications to run out-of-core efficiently. We also demonstrate that the main advantage of virtual memory, namely programming simplicity, is not lost. Keywords: virtual memory, file interface, memory-intensive, scientific applications, outof -core, fetch, store, replacement, custom policies 1 Introduction Industrial and grand-challenge simulations often require more memory than can be made available in RAM on high-performance systems. The efficient use of temporary (disk) storage for memory-intensive applicat...

Cooperative Caching And Prefetching In Parallel/distributed File Systems

by Toni Cortes, Jesus Labarta, Toni Cortes, Emilio Luque, Nacho Navarro , 1997
"... If we examine the structure of the applications that run on parallel machines, we observe that their I/O needs increase tremendously every day. These applications work with very large data sets which, in most cases, do not fit in memory and have to be kept in the disk. The input and output data file ..."
Abstract - Cited by 4 (1 self) - Add to MetaCart
If we examine the structure of the applications that run on parallel machines, we observe that their I/O needs increase tremendously every day. These applications work with very large data sets which, in most cases, do not fit in memory and have to be kept in the disk. The input and output data files are also very large and have to be accessed very fast. These large applications also want to be able to checkpoint themselves without wasting too much time. These facts constantly increase the expectations placed on parallel and distributed file systems. Thus, these file systems have to improve their performance to avoid becoming the bottleneck in parallel/distributed environments. On the other hand, while the performance of the new processors, interconnection networks and memory increases very rapidly, no such thing happens with the disk performance. This lack of improvement is due to the mechanical parts used to build the disks. These components are slow and limit both the latency and t...

An MPI-IO Interface to HPSS

by Terry Jones Richard, Richard Mark, Jeanne Martin, John May Elsie Pierce , 1996
"... This paper describes an implementation of the proposed MPI-IO [5] standard for parallel I/O. Our system uses third-party transfer to move data over an external network between the processors where it is used and the I/O devices where it resides. Data travels directly from source to destination, with ..."
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This paper describes an implementation of the proposed MPI-IO [5] standard for parallel I/O. Our system uses third-party transfer to move data over an external network between the processors where it is used and the I/O devices where it resides. Data travels directly from source to destination, without the need for shuffling it among processors or funneling it through a central node. Our distributed server model lets multiple compute nodes share the burden of coordinating data transfers.

Cooperative High-Performance Storage in the Accelerated Strategic Computing Initiative

by Mark Gary, Barry Howard, Steve Louis, Kim Minuzzo, Mark Seager , 1996
"... The use and acceptance of new high-performance, parallel computing platforms will be impeded by the absence of an infrastructure capable of supporting orders-of-magnitude improvement in hierarchical storage and high-speed I/O. The distribution of these highperformance platforms and supporting infras ..."
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The use and acceptance of new high-performance, parallel computing platforms will be impeded by the absence of an infrastructure capable of supporting orders-of-magnitude improvement in hierarchical storage and high-speed I/O. The distribution of these highperformance platforms and supporting infrastructures across a wide-area network further compounds this problem. We describe an architectural design and phased implementation plan for a distributed, cooperative storage environment (CSE) to achieve the necessary performance, user transparency, site autonomy, communication, and security features needed to support the Accelerated Strategic Computing Initiative (ASCI). ASCI is a Department of Energy (DOE) program attempting to apply terascale platforms and problemsolving environments (PSEs) toward real-world computational modeling and simulation problems. The ASCI mission must be carried out through a unified, multi-laboratory effort, and will require highly secure, efficient access to vast amounts of data. The CSE provides a logically simple, geographically distributed, storage infrastructure of semi-autonomous cooperating sites to meet the strategic ASCI PSE goal of high-performance data storage and access at the user desktop.

Efficient and Object-Oriented Libraries for Particle Simulations

by S. Ganzenmüller, M. Hipp , S. Kunze, S. Pinkenburg, M. Ritt, W. Rosenstiel, H. Ruder, C. Schäfer
"... ..."
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1 Efficient and Object-Oriented Libraries for Particle Simulations

by S. Ganzenmüller, S. Kunze, S. Pinkenburg, M. Ritt, W. Rosenstiel, H. Ruder, C. Schäfer
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