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An algorithm for the construction of spatial coverage designs with implementation in S-PLUS. (1998)

by J A Royle, D Nychka
Venue:Computional Geoscience
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DACE -- A MATLAB Kriging Toolbox

by S.N. Lophaven, Hans Bruun Nielsen, J. Søndergaard , 2002
"... ..."
Abstract - Cited by 86 (0 self) - Add to MetaCart
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Bayesian geostatistical design

by Peter J. Diggle, Soren Lophaven, Peter Diggle - Scandinavian Journal of Statistics , 2006
"... copyright holder. Copyright © 2011 by the authors ..."
Abstract - Cited by 21 (0 self) - Add to MetaCart
copyright holder. Copyright © 2011 by the authors

Bayesian wombling for spatial point processes

by Shengde Liang , Sudipto Banerjee , Bradley P Carlin - Biometrics , 2009
"... Summary. In many applications involving geographically indexed data, interest focuses on identifying regions of rapid change in the spatial surface, or the related problem of the construction or testing of boundaries separating regions with markedly different observed values of the spatial variable ..."
Abstract - Cited by 8 (1 self) - Add to MetaCart
Summary. In many applications involving geographically indexed data, interest focuses on identifying regions of rapid change in the spatial surface, or the related problem of the construction or testing of boundaries separating regions with markedly different observed values of the spatial variable. This process is often referred to in the literature as boundary analysis or wombling. Recent developments in hierarchical models for point-referenced (geostatistical) and areal (lattice) data have led to corresponding statistical wombling methods, but there does not appear to be any literature on the subject in the pointprocess case, where the locations themselves are assumed to be random and likelihood evaluation is notoriously difficult. We extend existing point-level and areal wombling tools to this case, obtaining full posterior inference for multivariate spatial random effects that, when mapped, can help suggest spatial covariates still missing from the model. In the areal case we can also construct wombled maps showing significant boundaries in the fitted intensity surface, while the point-referenced formulation permits testing the significance of a postulated boundary. In the computationally demanding point-referenced case, our algorithm combines Monte Carlo approximants to the likelihood with a predictive process step to reduce the dimension of the problem to a manageable size. We apply these techniques to an analysis of colorectal and prostate cancer data from the northern half of Minnesota, where a key substantive concern is possible similarities in their spatial patterns, and whether they are affected by each patient's distance to facilities likely to offer helpful cancer screening options.
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...ibution of data locations, one possibility is to select knots on a uniform grid overlaid on the domain. Selection can then be achieved through a formal design-based approach that minimizes a spatially averaged predictive variance criterion (see, e.g., Diggle and Lophaven, 2006). However, in general the locations are highly irregular, generating substantial areas of sparse observations where we wish to avoid placing knots, since they would be “wasted” and possibly lead to inflated predictive process variances and slower convergence. Here we implement the space-covering design algorithms (e.g., Royle and Nychka, 1998) that yield a representative collection of knots that better cover the domain. Other alternatives include popular clustering algorithms such as k-means or more robust median-based partitioning around medoids algorithms (e.g., Kaufman and Rosseeauw, 1990). User-friendly implementations of these algorithms are available in R packages such as fields and cluster. 2.3.3 Gradients on predictive process surfaces. We assume a stationary and separable cross-covariance function Γw(s, s′; Bayesian Point Process Wombling 1247 θ) = ρ(s, s′; θ)Σ, where ρ(s, s′; θ) is a stationary univariate correlation func...

Supplement to “Hierarchical spatial models for predicting tree species assemblages across large domains.” DOI: 10.1214/09-AOAS250SUPP

by O. Finley, Sudipto Banerjee, Ronald E. Mcroberts , 2009
"... ar ..."
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OF THE UNIVERSITY OF MINNESOTA BY

by Sudipto Banerjee , 2012
"... First and foremost I want to thank my thesis advisor, Dr. Sudipto Banerjee, for his warm encouragement and thoughtful guidance. It has been an honor to be his Ph.D. student. The joy and enthusiasm he has for his research was contagious and motivational for me. Special thanks to my committee, Dr. Sni ..."
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First and foremost I want to thank my thesis advisor, Dr. Sudipto Banerjee, for his warm encouragement and thoughtful guidance. It has been an honor to be his Ph.D. student. The joy and enthusiasm he has for his research was contagious and motivational for me. Special thanks to my committee, Dr. Snigdhansu Chatterjee, Dr. Lynn E. Eberly, Dr. James Hodges and Dr. Julian Wolfson for their support, guidance and helpful sug-gestions. Their guidance has served me well and I owe them my heartfelt appreciation. I would specially like to thank Dr. Lan Wang, who is not available this time, but was a member on my committee since my Plan B presentation. My warm thanks are due to Dr. Andrew Finley for reviewing my paper and giving me valuable advice. I also like to thank Dr. Paul Delamater for being patient and answering my tedious questions and Barb Zweber for kindly reviewing my thesis. Lastly, I would like to thank my family for all their love and encouragement. For my mother who has supported me in all my pursuits. And most of all for my loving wife, Jia, whose faithful support during the final stages of this Ph.D. is so appreciated.
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... some remarks on knot selection. With evenly distributed locations, knots on a uniform grid (see, e.g., Diggle and Lophaven, 2006) may suffice. With irregular locations, space-covering designs (e.g., =-=Royle and Nychka, 1998-=-) yield a more representative set. In general, different knots selection methods still produce robust results in predictive process models (see, e.g., Finley et al., 2009; Banerjee et al., 2010). And ...

Acknowledgements

by unknown authors , 2012
"... I would like to acknowledge Andrew O. Finley in the Michigan State University for his constant help and insightful inputs. I would also acknowledge Dr. James S. Hodges, Dr. Cavan Reilly and Dr. Dennis Cook for their comments which have improved the quality of work presented here. ..."
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I would like to acknowledge Andrew O. Finley in the Michigan State University for his constant help and insightful inputs. I would also acknowledge Dr. James S. Hodges, Dr. Cavan Reilly and Dr. Dennis Cook for their comments which have improved the quality of work presented here.
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...often investigate sensitivity of inference to different choices of n∗, which entails separately estimating a number of low-rank models. Typically, for each n∗ we use some space-covering design (e.g., =-=Royle and Nychka, 1998-=-) to fix the knots. In chapter 2, our modeling framework expands existing hierarchical low-rank models, as explored in the aforementioned references, to accommodate modeling knot locations as random p...

DOI: 10.1214/07-SS032 Sparse sampling: Spatial design for monitoring stream networks ∗,†

by Melissa J. Dobbie, Don L. Stevens , 808
"... Abstract: Spatial designs for monitoring stream networks, especially e-phemeral systems, are typically non-standard, ‘sparse ’ and can be very complex, reflecting the complexity of the ecosystem being monitored, the scale of the population, and the competing multiple monitoring objectives. The main ..."
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Abstract: Spatial designs for monitoring stream networks, especially e-phemeral systems, are typically non-standard, ‘sparse ’ and can be very complex, reflecting the complexity of the ecosystem being monitored, the scale of the population, and the competing multiple monitoring objectives. The main purpose of this paper is to present a review of approaches to spatial design to enable informed decisions to be made about developing practical and optimal spatial designs for future monitoring of streams. Received December 2007. 1.
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...here is no dependence on the spatial covariance or the stochastic model. The design criterion is based on geometry and the distance between both current and potential sample locations. Royle & Nychka =-=[70]-=- and Nychka & Salzman [61] describe space-filling designs. Dixon et al. [23] describe an approach for the selection of river sampling sites that considers potential locations in a river networkM. Dob...

Bayesian Wombling for . . .

by Shengde Liang, et al. , 2009
"... In many applications involving geographically indexed data, interest focuses on identifying regions of rapid change in the spatial surface, or the related problem of the construction or testing of boundaries separating regions with markedly different observed values of the spatial variable. This p ..."
Abstract - Add to MetaCart
In many applications involving geographically indexed data, interest focuses on identifying regions of rapid change in the spatial surface, or the related problem of the construction or testing of boundaries separating regions with markedly different observed values of the spatial variable. This process is often referred to in the literature as boundary analysis or wombling. Recent developments in hierarchical models for point-referenced (geostatistical) and areal (lattice) data have led to corresponding statistical wombling methods, but there does not appear to be any literature on the subject in the pointprocess case, where the locations themselves are assumed to be random and likelihood evaluation is notoriously difficult. We extend existing point-level and areal wombling tools to this case, obtaining full posterior inference for multivariate spatial random effects that, when mapped, can help suggest spatial covariates still missing from the model. In the areal case we can also construct wombled maps showing significant boundaries in the fitted intensity surface, while the point-referenced formulation permits testing the significance of a postulated boundary. In the computationally demanding point-referenced case, our algorithm combines Monte Carlo approximants to the likelihood with a predictive process step to reduce the dimension of the problem to a manageable size. We apply these techniques to an analysis of colorectal and prostate cancer data from the northern half of Minnesota, where a key substantive concern is possible similarities in their spatial patterns, and whether they are affected by each patient’s distance to facilities likely to offer helpful cancer screening options.

DOI: 10.1111/j.1541-0420.2009.01203.x Bayesian Wombling for Spatial Point Processes

by Shengde Liang, Sudipto Banerjee, Bradley P. Carlin , 2009
"... Summary. In many applications involving geographically indexed data, interest focuses on identifying regions of rapid change in the spatial surface, or the related problem of the construction or testing of boundaries separating regions with markedly different observed values of the spatial variable. ..."
Abstract - Add to MetaCart
Summary. In many applications involving geographically indexed data, interest focuses on identifying regions of rapid change in the spatial surface, or the related problem of the construction or testing of boundaries separating regions with markedly different observed values of the spatial variable. This process is often referred to in the literature as boundary analysis or wombling. Recent developments in hierarchical models for point-referenced (geostatistical) and areal (lattice) data have led to corresponding statistical wombling methods, but there does not appear to be any literature on the subject in the pointprocess case, where the locations themselves are assumed to be random and likelihood evaluation is notoriously difficult. We extend existing point-level and areal wombling tools to this case, obtaining full posterior inference for multivariate spatial random effects that, when mapped, can help suggest spatial covariates still missing from the model. In the areal case we can also construct wombled maps showing significant boundaries in the fitted intensity surface, while the point-referenced formulation permits testing the significance of a postulated boundary. In the computationally demanding point-referenced case, our algorithm combines Monte Carlo approximants to the likelihood with a predictive process step to reduce the dimension of the problem to a manageable size. We apply these techniques to an analysis of colorectal and prostate cancer data from the northern half of Minnesota, where a key substantive concern is possible similarities in their spatial patterns, and whether they are affected by each patient’s distance to facilities likely to offer helpful cancer screening options.
(Show Context)

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...h to avoid placing knots, since they would be “wasted” and possibly lead to inflated predictive process variances and slower convergence. Here we implement the space-covering design algorithms (e.g., =-=Royle and Nychka, 1998-=-) that yield a representative collection of knots that better cover the domain. Other alternatives include popular clustering algorithms such as k-means or more robust median-based partitioning around...

Entropy Based Spatial Design: A genetic Algorithm Approach (Case Study)

by Abbas Siefi, Mohammad Javad Karimifar
"... Abstract—We study the spatial design of experiment and we want to select a most informative subset, having prespecified size, from a set of correlated random variables. The problem arises in many applied domains, such as meteorology, environmental statistics, and statistical geology. In these applic ..."
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Abstract—We study the spatial design of experiment and we want to select a most informative subset, having prespecified size, from a set of correlated random variables. The problem arises in many applied domains, such as meteorology, environmental statistics, and statistical geology. In these applications, observations can be collected at different locations and possibly at different times. In spatial design, when the design region and the set of interest are discrete then the covariance matrix completely describe any objective function and our goal is to choose a feasible design that minimizes the resulting uncertainty. The problem is recast as that of maximizing the determinant of the covariance matrix of the chosen subset. This problem is NP-hard. For using these designs in computer experiments, in many cases, the design space is very large and it's not possible to calculate the exact optimal solution. Heuristic optimization methods can discover efficient experiment designs in situations where traditional designs cannot be applied, exchange methods are ineffective and exact solution not possible. We developed a GA algorithm to take advantage of the exploratory power of this algorithm. The successful application of this method is demonstrated in large design space. We consider a real case of design of experiment. In our problem, design space is very large and for solving the problem, we used proposed GA algorithm.
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...here is no dependence on the spatial covariance or the stochastic model. The design criterion is based on geometry and the distance between both current and potential sample locations. Royle & Nychka =-=[17]-=- and Nychka & Salzman [18] describe space-filling designs. Probability-based designs assume a fixed underlying process and use probability sampling to select the monitoring sites. This contrasts with ...

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