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M.: Biclustering of expression microarray data using affinity propagation (2011)

by A Farinelli, M Denitto, Bicego
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A Binary Factor Graph Model for Biclustering

by Matteo Denitto, Ro Farinelli, Giuditta Franco, Manuele Bicego
"... Abstract. Biclustering, which can be defined as the simultaneous clus-tering of rows and columns in a data matrix, has received increasing attention in recent years, particularly in the field of Bioinformatics (e.g. for the analysis of microarray data). This paper proposes a novel biclus-tering appr ..."
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Abstract. Biclustering, which can be defined as the simultaneous clus-tering of rows and columns in a data matrix, has received increasing attention in recent years, particularly in the field of Bioinformatics (e.g. for the analysis of microarray data). This paper proposes a novel biclus-tering approach, which extends the Affinity Propagation [1] clustering algorithm to the biclustering case. In particular, we propose a new ex-emplar based model, encoded as a binary factor graph, which allows to cluster rows and columns simultaneously. Moreover, we propose a li-near formulation of such model to solve the optimization problem using Linear Programming techniques. The proposed approach has been tested by using a well known synthetic microarray benchmark, with encouraging results. 1
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.... 394–403, 2014. c© Springer-Verlag Berlin Heidelberg 2014 A Binary Factor Graph Model for Biclustering 395 biclustering problem, for example by repeatedly performing experiments and genes clustering =-=[8,9]-=-. This paper follows the above-described research trend, and proposes a novel biclustering algorithm, which extends and adapts to the biclustering scenario the well known Affinity Propagation (AP) clu...

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