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81
Decomposable Graphical Gaussian Model Determination
, 1999
"... We propose a methodology for Bayesian model determination in decomposable graphical gaussian models. To achieve this aim we consider a hyper inverse Wishart prior distribution on the concentration matrix for each given graph. To ensure compatibility across models, such prior distributions are obt ..."
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Cited by 64 (12 self)
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We propose a methodology for Bayesian model determination in decomposable graphical gaussian models. To achieve this aim we consider a hyper inverse Wishart prior distribution on the concentration matrix for each given graph. To ensure compatibility across models, such prior distributions are obtained by marginalisation from the prior conditional on the complete graph. We explore alternative structures for the hyperparameters of the latter, and their consequences for the model. Model determination is carried out by implementing a reversible jump MCMC sampler. In particular, the dimensionchanging move we propose involves adding or dropping an edge from the graph. We characterise the set of moves which preserve the decomposability of the graph, giving a fast algorithm for maintaining the junction tree representation of the graph at each sweep. As state variable, we propose to use the incomplete variancecovariance matrix, containing only the elements for which the correspondi...
NeighborhoodBased Models for Social Networks
 Sociological Methodology
, 2002
"... Harrison White and several anonymous reviewers for valuable comments on the work. We argue that social networks can be modeled as the outcome of processes that occur in overlapping local regions of the network, termed local social neighborhoods. Each neighborhood is conceived as a possible site of i ..."
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Cited by 54 (4 self)
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Harrison White and several anonymous reviewers for valuable comments on the work. We argue that social networks can be modeled as the outcome of processes that occur in overlapping local regions of the network, termed local social neighborhoods. Each neighborhood is conceived as a possible site of interaction and corresponds to a subset of possible network ties. In this paper, we discuss hypotheses about the form of these neighborhoods, and we present two new and theoretically plausible ways in which neighborhoodbased models for networks can be constructed. In the first, we introduce the notion of a setting structure, a directly hypothesized (or observed) set of exogenous constraints on possible neighborhood forms. In the second, we propose higherorder neighborhoods that are generated, in part, by the outcome of interactive network processes themselves. Applications of both approaches to model construction are presented, and the developments are considered within a general conceptual framework of locale for social networks. We show how assumptions about neighborhoods can be cast within a hierarchy of increasingly complex models; these models represent a progressively greater capacity for network processes to “reach ” across a network through long cycles or semipaths. We argue that this class of models holds new promise for the development of empirically plausible models for networks and networkbased processes. 2 1.
Chain Graph Models and their Causal Interpretations
 B
, 2001
"... Chain graphs are a natural generalization of directed acyclic graphs (DAGs) and undirected graphs. However, the apparent simplicity of chain graphs belies the subtlety of the conditional independence hypotheses that they represent. There are a number of simple and apparently plausible, but ultim ..."
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Cited by 48 (4 self)
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Chain graphs are a natural generalization of directed acyclic graphs (DAGs) and undirected graphs. However, the apparent simplicity of chain graphs belies the subtlety of the conditional independence hypotheses that they represent. There are a number of simple and apparently plausible, but ultimately fallacious interpretations of chain graphs that are often invoked, implicitly or explicitly. These interpretations also lead to awed methods for applying background knowledge to model selection. We present a valid interpretation by showing how the distribution corresponding to a chain graph may be generated as the equilibrium distribution of dynamic models with feedback. These dynamic interpretations lead to a simple theory of intervention, extending the theory developed for DAGs. Finally, we contrast chain graph models under this interpretation with simultaneous equation models which have traditionally been used to model feedback in econometrics. Keywords: Causal model; cha...
Improved learning of Bayesian networks
 Proc. of the Conf. on Uncertainty in Artificial Intelligence
, 2001
"... Two or more Bayesian network structures are Markov equivalent when the corresponding acyclic digraphs encode the same set of conditional independencies. Therefore, the search space of Bayesian network structures may be organized in equivalence classes, where each of them represents a different set o ..."
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Cited by 37 (6 self)
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Two or more Bayesian network structures are Markov equivalent when the corresponding acyclic digraphs encode the same set of conditional independencies. Therefore, the search space of Bayesian network structures may be organized in equivalence classes, where each of them represents a different set of conditional independencies. The collection of sets of conditional independencies obeys a partial order, the socalled “inclusion order.” This paper discusses in depth the role that the inclusion order plays in learning the structure of Bayesian networks. In particular, this role involves the way a learning algorithm traverses the search space. We introduce a condition for traversal operators, the inclusion boundary condition, which, when it is satisfied, guarantees that the search strategy can avoid local maxima. This is proved under the assumptions that the data is sampled from a probability distribution which is faithful to an acyclic digraph, and the length of the sample is unbounded. The previous discussion leads to the design of a new traversal operator and two new learning algorithms in the context of heuristic search and the Markov Chain Monte Carlo method. We carry out a set of experiments with synthetic and realworld data that show empirically the benefit of striving for the inclusion order when learning Bayesian networks from data.
An Extended Class of Instrumental Variables for the Estimation of Causal Effects
 UCSD DEPT. OF ECONOMICS DISCUSSION PAPER
, 1996
"... This paper builds on the structural equations, treatment effect, and machine learning literatures to provide a causal framework that permits the identification and estimation of causal effects from observational studies. We begin by providing a causal interpretation for standard exogenous regresso ..."
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Cited by 32 (13 self)
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This paper builds on the structural equations, treatment effect, and machine learning literatures to provide a causal framework that permits the identification and estimation of causal effects from observational studies. We begin by providing a causal interpretation for standard exogenous regressors and standard “valid” and “relevant” instrumental variables. We then build on this interpretation to characterize extended instrumental variables (EIV) methods, that is methods that make use of variables that need not be valid instruments in the standard sense, but that are nevertheless instrumental in the recovery of causal effects of interest. After examining special cases of single and double EIV methods, we provide necessary and sufficient conditions for the identification of causal effects by means of EIV and provide consistent and asymptotically normal estimators for the effects of interest.
Identifying the consequences of dynamic treatment strategies
, 2005
"... We formulate the problem of learning and comparing the effects of dynamic treatment strategies in a probabilistic decisiontheoretic framework, and in particular show how Robins’s “Gcomputation ” formula arises naturally. Careful attention is paid to the mathematical and substantive conditions nece ..."
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Cited by 18 (10 self)
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We formulate the problem of learning and comparing the effects of dynamic treatment strategies in a probabilistic decisiontheoretic framework, and in particular show how Robins’s “Gcomputation ” formula arises naturally. Careful attention is paid to the mathematical and substantive conditions necessary to justify use of this formula. Probabilistic influence diagrams are used to simplify manipulations. We compare our approach with formulations based on causal DAGs and on potential response models. Some key words and phrases: Causal inference; Gcomputation; Influence diagram; Observational study; Potential response; Sequential decision theory; Stability. 1
A Bayesian Network Approach To Making Inferences In Causal Maps
, 1999
"... . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1. Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ..."
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Cited by 17 (2 self)
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1. Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 2. Causal Maps. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3 3. Bayesian Networks. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5 3.1. Semantics . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ....
Binary models for marginal independence
 JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B
, 2005
"... A number of authors have considered multivariate Gaussian models for marginal independence. In this paper we develop models for binary data with the same independence structure. The models can be parameterized based on Möbius inversion and maximum likelihood estimation can be performed using a versi ..."
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Cited by 16 (2 self)
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A number of authors have considered multivariate Gaussian models for marginal independence. In this paper we develop models for binary data with the same independence structure. The models can be parameterized based on Möbius inversion and maximum likelihood estimation can be performed using a version of the Iterated Conditional Fitting algorithm. The approach is illustrated on a simple example. Relations to multivariate logistic and dependence ratio models are discussed.