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BioMed Central
, 2006
"... Research article Mariner mutagenesis of Brucella melitensis reveals genes with previously uncharacterized roles in virulence and survival ..."
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Cited by 2 (0 self)
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Research article Mariner mutagenesis of Brucella melitensis reveals genes with previously uncharacterized roles in virulence and survival
An Introduction to Metabolic Networks and Their Structural Analysis
"... Abstract—There has been a renewed interest for metabolism in the computational biology community, leading to an avalanche of papers coming from methodological network analysis as well as experimental and theoretical biology. This paper is meant to serve as ..."
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Abstract—There has been a renewed interest for metabolism in the computational biology community, leading to an avalanche of papers coming from methodological network analysis as well as experimental and theoretical biology. This paper is meant to serve as
BMC Systems Biology BioMed Central
, 2008
"... Research article Iterative reconstruction of a global metabolic model of Acinetobacter baylyi ADP1 using high-throughput growth phenotype and gene essentiality data ..."
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Research article Iterative reconstruction of a global metabolic model of Acinetobacter baylyi ADP1 using high-throughput growth phenotype and gene essentiality data
BMC Genomics BioMed Central Database The RAST Server: Rapid Annotations using Subsystems Technology
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Small noncoding RNA GcvB is a novel regulator of acid resistance in Escherichia coli
, 2009
"... © 2009 Jin et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ..."
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© 2009 Jin et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License
BioMed Central Software The Genome Reverse Compiler: an explorative annotation tool
, 2008
"... which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Background: As sequencing costs have decreased, whole genome sequencing has become a viable and integral part of biological laboratory research. However, the tools with which g ..."
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which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Background: As sequencing costs have decreased, whole genome sequencing has become a viable and integral part of biological laboratory research. However, the tools with which genes can be found and functionally characterized have not been readily adapted to be part of the everyday biological sciences toolkit. Most annotation pipelines remain as a service provided by large institutions or come as an unwieldy conglomerate of independent components, each requiring their own setup and maintenance. Results: To address this issue we have created the Genome Reverse Compiler, an easy-to-use, open-source, automated annotation tool. The GRC is independent of third party software installs and only requires a Linux operating system. This stands in contrast to most annotation packages, which typically require installation of relational databases, sequence similarity software, and a number of other programming language modules. We provide details on the methodology used by GRC and evaluate its performance on several groups of prokaryotes using GRC's built in comparison module.
Open Access
"... Small variable segments constitute a major type of diversity of bacterial genomes at the species level ..."
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Small variable segments constitute a major type of diversity of bacterial genomes at the species level
